Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 4.7e-54 214.5 129 100.0
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.4e-34 149.8 90 75.6
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 7.0e-34 147.5 90 74.4
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.5e-33 144.8 89 73.0
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 5.9e-33 144.4 89 71.9
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 1.3e-32 143.3 98 68.4
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 1.3e-32 143.3 89 70.8
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.3e-32 142.5 90 74.4
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 3.8e-32 141.7 91 73.6
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 3.8e-32 141.7 90 68.9
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 3.8e-32 141.7 119 60.5
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 5.0e-32 141.4 89 73.0
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.0e-32 141.4 90 72.2
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 6.5e-32 141.0 90 70.0
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 6.5e-32 141.0 89 70.8
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.1e-31 140.2 91 71.4
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.9e-31 139.4 91 71.4
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.5e-31 139.0 88 69.3
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.5e-31 139.0 91 71.4
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 3.2e-31 138.7 90 70.0
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 5.5e-31 137.9 88 69.3
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.5e-31 137.9 91 71.4
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 7.2e-31 137.5 130 55.4
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 7.2e-31 137.5 133 55.6
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 9.5e-31 137.1 90 68.9
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 9.5e-31 137.1 90 68.9
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.2e-30 136.7 90 70.0
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.2e-30 136.7 88 68.2
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.6e-30 136.3 90 68.9
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.6e-30 136.3 90 68.9
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 2.8e-30 135.6 91 70.3
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.6e-30 135.2 88 69.3
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.7e-30 134.8 88 69.3
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 4.7e-30 134.8 90 68.9
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 6.1e-30 134.4 90 68.9
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 6.1e-30 134.4 89 67.4
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 6.1e-30 134.4 88 68.2
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 8.0e-30 134.0 88 68.2
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.4e-29 133.3 90 66.7
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 1.4e-29 133.3 90 67.8
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.4e-29 133.3 88 65.9
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.8e-29 132.9 90 62.2
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.8e-29 132.9 90 66.7
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.8e-29 132.9 89 67.4
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 1.8e-29 132.9 91 65.9
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 1.8e-29 132.9 89 67.4
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.8e-29 132.9 88 68.2
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 2.3e-29 132.5 88 68.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.3e-29 132.5 90 66.7
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 3.0e-29 132.1 90 66.7
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 4.0e-29 131.7 89 67.4
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 4.0e-29 131.7 91 68.1
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 4.0e-29 131.7 90 67.8
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 5.2e-29 131.3 90 66.7
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 5.2e-29 131.3 90 66.7
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 6.8e-29 131.0 90 68.9
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 8.8e-29 130.6 90 65.6
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 2.0e-28 129.4 90 66.7
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 2.0e-28 129.4 89 66.3
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.0e-28 129.4 88 67.0
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.6e-28 129.0 88 67.0
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.6e-28 129.0 90 62.2
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.6e-28 129.0 90 67.8
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 4.4e-28 128.3 87 67.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.7e-27 126.3 90 64.4
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 2.8e-27 125.6 89 64.0
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 3.7e-27 125.2 86 65.1
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 6.3e-27 124.4 92 64.1
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 6.3e-27 124.4 88 68.2
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 8.3e-27 124.0 87 64.4
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 8.3e-27 124.0 107 55.1
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.4e-26 123.2 87 63.2
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.4e-26 123.2 90 60.0
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 5.4e-26 121.3 105 58.1
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.6e-25 119.8 89 65.2
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.6e-25 119.8 87 63.2
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 2.0e-25 119.4 89 64.0
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 2.7e-25 119.0 90 58.9
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.5e-25 118.6 90 55.6
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 5.9e-25 117.9 90 61.1
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 5.9e-25 117.9 85 63.5
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 7.8e-25 117.5 87 63.2
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.0e-24 117.1 89 62.9
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.0e-24 117.1 89 62.9
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.3e-24 116.7 91 59.3
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 1.7e-24 116.3 85 62.4
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.3e-24 115.9 90 54.4
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 5.0e-24 114.8 83 63.9
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 5.0e-24 114.8 90 56.7
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 8.6e-24 114.0 91 61.5
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.5e-23 113.2 89 60.7
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.5e-23 113.2 90 57.8
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 3.3e-23 112.1 94 55.3
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.3e-23 112.1 88 58.0
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.6e-23 111.3 90 57.8
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.1e-22 109.4 89 56.2
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 2.8e-22 109.0 80 63.8
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 4.7e-22 108.2 92 52.2
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 8.0e-22 107.5 81 64.2
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 8.0e-22 107.5 91 54.9
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 8.0e-22 107.5 89 56.2
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.8e-21 106.3 92 54.3
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.8e-21 106.3 85 60.0
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.3e-21 105.9 90 54.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.0e-21 105.5 91 57.1
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.0e-21 105.5 90 56.7
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 3.0e-21 105.5 85 60.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 8.9e-21 104.0 92 52.2
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.5e-20 103.2 89 51.7
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.6e-20 102.4 91 54.9
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 4.4e-20 101.7 77 61.0
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 5.7e-20 101.3 65 67.7
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 5.7e-20 101.3 68 64.7
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 5.7e-20 101.3 93 53.8
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.7e-19 99.8 62 66.1
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 8.3e-19 97.4 88 50.0
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 1.8e-18 96.3 79 54.4
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.4e-18 95.9 68 64.7
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 3.2e-18 95.5 85 56.5
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.6e-17 93.2 59 66.1
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 3.0e-16 89.0 60 61.7
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 5.0e-16 88.2 76 53.9
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.5e-15 85.9 73 49.3
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.6e-15 84.7 65 52.3
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.8e-13 79.7 73 47.9
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 3.1e-13 79.0 66 59.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.0e-13 78.6 56 62.5
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.0e-12 76.3 59 50.8
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.0e-12 76.3 45 68.9
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.0e-12 76.3 64 53.1
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.6e-12 75.9 82 35.4
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.4e-12 75.5 66 43.9
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 6.4e-11 71.2 60 51.7
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.4e-10 70.1 73 41.1
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 9.2e-10 67.4 55 61.8
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.2e-09 67.0 76 43.4
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.6e-09 65.1 59 45.8
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 7.8e-09 64.3 62 45.2
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 3.0e-08 62.4 68 39.7
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.0e-08 62.4 37 70.3
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.5e-07 59.3 49 51.0


User provided reference genes

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