Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 4.8e-92 341.3 188 100.0
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 1.6e-31 140.2 164 46.3
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.1e-30 137.5 99 69.7
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 2.0e-29 133.3 166 41.6
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 3.4e-29 132.5 184 38.6
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 1.7e-28 130.2 184 39.1
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 2.9e-28 129.4 184 37.0
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 1.1e-27 127.5 184 37.5
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 1.1e-27 127.5 184 37.5
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 1.4e-27 127.1 184 37.5
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 1.9e-27 126.7 184 36.4
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 2.4e-27 126.3 185 37.3
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 7.1e-27 124.8 126 50.8
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 2.1e-26 123.2 163 39.3
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 2.7e-26 122.9 127 46.5
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 3.5e-26 122.5 179 37.4
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 3.5e-26 122.5 121 49.6
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 4.6e-26 122.1 165 37.6
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 3.0e-25 119.4 127 47.2
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 3.9e-25 119.0 125 48.8
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 6.6e-25 118.2 172 37.2
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.9e-24 116.7 167 37.1
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 4.3e-24 115.5 163 38.0
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 5.6e-24 115.2 183 37.2
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 8.1e-23 111.3 126 43.7
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.1e-22 110.9 163 38.0
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 1.1e-22 110.9 195 33.8
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 2.4e-22 109.8 126 43.7
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 3.1e-22 109.4 126 43.7
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 3.1e-22 109.4 126 43.7
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 3.1e-22 109.4 126 43.7
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.0e-22 109.0 126 42.9
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 4.0e-22 109.0 164 38.4
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 9.0e-22 107.8 168 35.7
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 9.0e-22 107.8 168 35.7
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 1.5e-21 107.1 114 47.4
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 2.6e-21 106.3 182 31.9
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 4.4e-21 105.5 124 41.1
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.8e-21 105.1 146 38.4
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.8e-21 105.1 126 42.1
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 7.6e-21 104.8 184 32.1
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 7.6e-21 104.8 177 33.9
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 9.9e-21 104.4 124 41.1
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 2.9e-20 102.8 126 42.9
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 2.9e-20 102.8 124 41.1
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 6.4e-20 101.7 126 41.3
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 2.4e-19 99.8 120 45.0
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.4e-19 98.6 124 39.5
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 7.1e-19 98.2 126 38.9
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 1.6e-18 97.1 126 38.9
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 2.1e-18 96.7 183 33.3
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 2.1e-18 96.7 115 41.7
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 2.7e-18 96.3 126 37.3
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.7e-18 96.3 119 37.8
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 1.0e-17 94.4 184 38.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.7e-17 93.6 94 48.9
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 2.3e-17 93.2 126 38.1
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 2.3e-17 93.2 127 37.8
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 3.9e-17 92.4 92 46.7
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 5.1e-17 92.0 119 37.8
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 6.6e-17 91.7 100 41.0
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 1.9e-16 90.1 89 51.7
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 3.3e-16 89.4 90 47.8
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 3.3e-16 89.4 101 43.6
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 4.3e-16 89.0 123 38.2
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 7.3e-16 88.2 123 39.8
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 7.3e-16 88.2 96 43.8
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 7.3e-16 88.2 92 44.6
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 7.3e-16 88.2 94 48.9
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 9.6e-16 87.8 114 41.2
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.3e-15 87.4 96 44.8
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 1.6e-15 87.0 96 43.8
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.1e-15 86.7 123 39.8
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 2.1e-15 86.7 183 31.7
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 3.6e-15 85.9 92 45.7
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 6.2e-15 85.1 126 40.5
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 6.2e-15 85.1 176 31.8
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 8.1e-15 84.7 91 45.1
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 8.1e-15 84.7 183 31.7
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 8.1e-15 84.7 92 43.5
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 1.1e-14 84.3 103 41.7
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 1.4e-14 84.0 123 35.8
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 1.8e-14 83.6 87 47.1
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 1.8e-14 83.6 97 45.4
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 1.8e-14 83.6 105 45.7
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 3.1e-14 82.8 92 43.5
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 3.1e-14 82.8 89 44.9
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 1.2e-13 80.9 76 48.7
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 1.2e-13 80.9 92 45.7
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 1.5e-13 80.5 120 40.0
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 2.0e-13 80.1 89 42.7
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.0e-13 80.1 107 42.1
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.0e-13 80.1 123 31.7
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 2.6e-13 79.7 90 41.1
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 7.6e-13 78.2 81 51.9
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 9.9e-13 77.8 107 42.1
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 2.2e-12 76.6 100 39.0
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 2.9e-12 76.3 87 42.5
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 6.4e-12 75.1 99 38.4
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 8.4e-12 74.7 96 40.6
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 1.1e-11 74.3 100 39.0
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.9e-11 73.6 183 26.2
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 2.4e-11 73.2 86 40.7
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 9.3e-11 71.2 83 42.2
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 3.5e-10 69.3 127 35.4
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 3.5e-10 69.3 74 45.9
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 7.9e-10 68.2 90 34.4
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 1.0e-09 67.8 75 40.0
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 1.8e-09 67.0 82 45.1
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 3.0e-09 66.2 80 42.5
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 3.0e-09 66.2 73 45.2
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 1.1e-08 64.3 149 30.2
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 1.9e-08 63.5 123 32.5
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 7.4e-08 61.6 94 30.9
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 2.1e-07 60.1 77 36.4
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 6.9e-06 55.1 113 31.0


User provided reference genes

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