Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01978 Aquilegia oxysepala HOM05D003037 ORTHO05D003659 2.5e-66 255.4 134 100.0
Aqoxy6G01972 Aquilegia oxysepala HOM05D003037 ORTHO05D003659 1.0e-51 206.8 115 97.4
Aqoxy6G01993 Aquilegia oxysepala HOM05D003037 ORTHO05D003659 8.8e-48 193.7 142 79.6
Aqoxy6G01963 Aquilegia oxysepala HOM05D003037 ORTHO05D003659 2.5e-42 175.6 234 51.7
MBI05_g00183_MAGBIO Magnolia biondii HOM05D003037 ORTHO05D003659 6.6e-11 71.2 67 59.7
Phvul.006G218100 Phaseolus vulgaris HOM05D003037 ORTHO05D003659 1.5e-10 70.1 43 74.4
Potri.004G222400 Populus trichocarpa HOM05D003037 ORTHO05D003659 1.5e-10 70.1 46 71.7
Atru.chr6.760 Acer truncatum HOM05D003037 ORTHO05D003659 2.5e-10 69.3 39 79.5
Ciclev10003581m.g Citrus clementina HOM05D003037 ORTHO05D003659 2.5e-10 69.3 35 88.6
PGSC0003DMG400024926 Solanum tuberosum HOM05D003037 ORTHO05D003659 2.5e-10 69.3 45 73.3
VMungo0540G1935 Vigna mungo HOM05D003037 ORTHO05D003659 2.5e-10 69.3 67 59.7
COL.COLO4_17755 Corchorus olitorius HOM05D003037 ORTHO05D003659 4.3e-10 68.6 67 58.2
Lj4g0001882 Lotus japonicus HOM05D003037 ORTHO05D003659 4.3e-10 68.6 67 58.2
arahy.Tifrunner.gnm1.ann1.Y8ZHMJ Arachis hypogaea HOM05D003037 ORTHO05D003659 5.6e-10 68.2 67 56.7
Gohir.A12G043400 Gossypium hirsutum HOM05D003037 ORTHO05D003659 5.6e-10 68.2 43 72.1
Nitab4.5_0000948g0100 Nicotiana tabacum HOM05D003037 ORTHO05D003659 5.6e-10 68.2 45 73.3
Peaxi162Scf00011g00092 Petunia axillaris HOM05D003037 ORTHO05D003659 5.6e-10 68.2 45 73.3
Sc16g0002460 Simmondsia chinensis HOM05D003037 ORTHO05D003659 5.6e-10 68.2 43 69.8
Gohir.D12G042900 Gossypium hirsutum HOM05D003037 ORTHO05D003659 7.3e-10 67.8 43 72.1
Gorai.008G044900 Gossypium raimondii HOM05D003037 ORTHO05D003659 7.3e-10 67.8 43 72.1
Ah.03g137100 Amaranthus hybridus HOM05D003037 ORTHO05D003659 9.6e-10 67.4 42 69.0
ClCG11G013340 Citrullus lanatus HOM05D003037 ORTHO05D003659 9.6e-10 67.4 45 71.1
Migut.B00789 Erythranthe guttata HOM05D003037 ORTHO05D003659 9.6e-10 67.4 43 69.8
Hma1.2p1_0427F.1_g150700 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 9.6e-10 67.4 45 71.1
PSO675G4829 Papaver somniferum HOM05D003037 ORTHO05D003659 9.6e-10 67.4 67 55.2
TAR381G0039 Trochodendron aralioides HOM05D003037 ORTHO05D003659 9.6e-10 67.4 45 71.1
TAR624G0307 Trochodendron aralioides HOM05D003037 ORTHO05D003659 9.6e-10 67.4 45 71.1
Peaxi162Scf00002g02511 Petunia axillaris HOM05D003037 ORTHO05D003659 1.2e-09 67.0 43 67.4
Ca_00048_v3 Cicer arietinum L. HOM05D003037 ORTHO05D003659 1.6e-09 66.6 67 56.7
FAN03G1983 Fragaria x ananassa HOM05D003037 ORTHO05D003659 1.6e-09 66.6 43 69.8
Medtr4g130680 Medicago truncatula HOM05D003037 ORTHO05D003659 1.6e-09 66.6 66 57.6
Nn4g24648 Nelumbo nucifera HOM05D003037 ORTHO05D003659 1.6e-09 66.6 43 67.4
PSO541G5800 Papaver somniferum HOM05D003037 ORTHO05D003659 1.6e-09 66.6 67 55.2
arahy.Tifrunner.gnm1.ann1.3Q8GGF Arachis hypogaea HOM05D003037 ORTHO05D003659 2.1e-09 66.2 67 55.2
Cfa005476 Carpinus fangiana HOM05D003037 ORTHO05D003659 2.1e-09 66.2 68 52.9
Glyma.19G177100 Glycine max HOM05D003037 ORTHO05D003659 2.1e-09 66.2 67 56.7
PGR042G0094 Punica granatum HOM05D003037 ORTHO05D003659 2.1e-09 66.2 43 67.4
CDE11G0137 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 2.8e-09 65.9 43 67.4
Manes.07G022900 Manihot esculenta HOM05D003037 ORTHO05D003659 2.8e-09 65.9 67 55.2
Prupe.8G013600 Prunus persica HOM05D003037 ORTHO05D003659 2.8e-09 65.9 67 53.7
Rhsim11G0125200 Rhododendron simsii HOM05D003037 ORTHO05D003659 2.8e-09 65.9 45 71.1
SGA_v2.0_scaffold272G46366 Striga asiatica HOM05D003037 ORTHO05D003659 2.8e-09 65.9 43 69.8
vmacro01725 Vaccinium macrocarpon HOM05D003037 ORTHO05D003659 2.8e-09 65.9 45 71.1
CSS0012029 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 3.6e-09 65.5 45 68.9
CSS0041282 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 3.6e-09 65.5 45 68.9
Dinv19397 Davidia involucrata HOM05D003037 ORTHO05D003659 3.6e-09 65.5 45 68.9
FvH4_7g02550 Fragaria vesca HOM05D003037 ORTHO05D003659 3.6e-09 65.5 43 67.4
FAN06G4382 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.6e-09 65.5 43 67.4
FAN10G2304 Fragaria x ananassa HOM05D003037 ORTHO05D003659 3.6e-09 65.5 43 67.4
Gohir.D04G175800 Gossypium hirsutum HOM05D003037 ORTHO05D003659 3.6e-09 65.5 43 69.8
Oeu000128.2 Olea europaea HOM05D003037 ORTHO05D003659 3.6e-09 65.5 45 68.9
SEGI_29627 Sequoiadendron giganteum HOM05D003037 ORTHO05D003659 3.6e-09 65.5 36 77.8
EL10Ac6g14061 Beta vulgaris HOM05D003037 ORTHO05D003659 4.7e-09 65.1 46 65.2
CSS0026106 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 4.7e-09 65.1 47 59.6
CSS0046523 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 4.7e-09 65.1 45 66.7
MD05G1010900 Malus domestica HOM05D003037 ORTHO05D003659 4.7e-09 65.1 43 67.4
Nitab4.5_0002596g0060 Nicotiana tabacum HOM05D003037 ORTHO05D003659 4.7e-09 65.1 74 51.4
Potri.019G057200 Populus trichocarpa HOM05D003037 ORTHO05D003659 4.7e-09 65.1 43 67.4
SalBow3G2424 Salvia bowleyana HOM05D003037 ORTHO05D003659 4.7e-09 65.1 67 55.2
Ah.02g126950 Amaranthus hybridus HOM05D003037 ORTHO05D003659 6.2e-09 64.7 42 66.7
CSS0016888 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 6.2e-09 64.7 45 66.7
CSS0017565 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 6.2e-09 64.7 60 53.3
GSVIVG01023275001 Vitis vinifera HOM05D003037 ORTHO05D003659 6.2e-09 64.7 67 55.2
ATR0661G422 Amborella trichopoda HOM05D003037 ORTHO05D003659 8.1e-09 64.3 35 74.3
MELO3C011826.2 Cucumis melo HOM05D003037 ORTHO05D003659 8.1e-09 64.3 67 52.2
CsaV3_5G029840 Cucumis sativus L. HOM05D003037 ORTHO05D003659 8.1e-09 64.3 67 52.2
DCAR_025355 Daucus carota HOM05D003037 ORTHO05D003659 8.1e-09 64.3 66 54.5
Gorai.012G167100 Gossypium raimondii HOM05D003037 ORTHO05D003659 8.1e-09 64.3 67 55.2
TWI75G1787 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 8.1e-09 64.3 66 56.1
Actinidia00185 Actinidia chinensis HOM05D003037 ORTHO05D003659 1.1e-08 63.9 45 66.7
AT1G09795 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 1.1e-08 63.9 39 71.8
CSS0001224 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.1e-08 63.9 45 66.7
CSS0041741 Camellia sinensis var. sinensis HOM05D003037 ORTHO05D003659 1.1e-08 63.9 45 64.4
CiPaw.05G051700 Carya illinoinensis HOM05D003037 ORTHO05D003659 1.1e-08 63.9 43 67.4
Gohir.A04G130600 Gossypium hirsutum HOM05D003037 ORTHO05D003659 1.1e-08 63.9 67 53.7
Lj9C300T15 Lonicera japonica HOM05D003037 ORTHO05D003659 1.1e-08 63.9 43 65.1
Sed0009851 Sechium edule HOM05D003037 ORTHO05D003659 1.1e-08 63.9 43 65.1
Solyc01g103750.4 Solanum lycopersicum HOM05D003037 ORTHO05D003659 1.1e-08 63.9 45 66.7
Sopen01g046150 Solanum pennellii HOM05D003037 ORTHO05D003659 1.1e-08 63.9 45 66.7
arahy.Tifrunner.gnm1.ann1.1LPG6U Arachis hypogaea HOM05D003037 ORTHO05D003659 1.4e-08 63.5 36 77.8
BcaC02g10704 Brassica carinata HOM05D003037 ORTHO05D003659 1.4e-08 63.5 43 62.8
Migut.N00833 Erythranthe guttata HOM05D003037 ORTHO05D003659 1.4e-08 63.5 67 53.7
Glyma.03G176400 Glycine max HOM05D003037 ORTHO05D003659 1.4e-08 63.5 67 55.2
Sabra01G0168500 Salix brachista HOM05D003037 ORTHO05D003659 1.4e-08 63.5 46 65.2
Duzib248G0822 Durio zibethinus HOM05D003037 ORTHO05D003659 1.8e-08 63.2 43 65.1
FAN01G1632 Fragaria x ananassa HOM05D003037 ORTHO05D003659 1.8e-08 63.2 66 54.5
MD10G1009700 Malus domestica HOM05D003037 ORTHO05D003659 1.8e-08 63.2 67 50.7
Prupe.8G013100 Prunus persica HOM05D003037 ORTHO05D003659 1.8e-08 63.2 43 62.8
QL02p100153 Quercus lobata HOM05D003037 ORTHO05D003659 1.8e-08 63.2 67 53.7
THA.LOC104823696 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 1.8e-08 63.2 43 62.8
Actinidia39012 Actinidia chinensis HOM05D003037 ORTHO05D003659 2.4e-08 62.8 45 66.7
CDE05G1085 Ceratophyllum demersum HOM05D003037 ORTHO05D003659 2.4e-08 62.8 33 81.8
Haze_01828 Corylus avellana HOM05D003037 ORTHO05D003659 2.4e-08 62.8 67 52.2
Medtr2g006040 Medicago truncatula HOM05D003037 ORTHO05D003659 2.4e-08 62.8 67 55.2
Sed0025195 Sechium edule HOM05D003037 ORTHO05D003659 2.4e-08 62.8 35 77.1
AL1G20370 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 3.1e-08 62.4 39 69.2
Carub.0001s0915 Capsella rubella HOM05D003037 ORTHO05D003659 3.1e-08 62.4 39 69.2
CARHR009780 Cardamine hirsuta HOM05D003037 ORTHO05D003659 3.1e-08 62.4 39 69.2
Manes.10G120100 Manihot esculenta HOM05D003037 ORTHO05D003659 3.1e-08 62.4 67 53.7
Aa31LG2G11000 Aethionema arabicum HOM05D003037 ORTHO05D003659 4.0e-08 62.0 43 60.5
Duzib052G1010 Durio zibethinus HOM05D003037 ORTHO05D003659 4.0e-08 62.0 43 67.4
Oeu036681.1 Olea europaea HOM05D003037 ORTHO05D003659 4.0e-08 62.0 45 68.9
BcaC04g22114 Brassica carinata HOM05D003037 ORTHO05D003659 5.2e-08 61.6 43 60.5
BcaC09g49512 Brassica carinata HOM05D003037 ORTHO05D003659 5.2e-08 61.6 43 60.5
C04p26910 Brassica napus HOM05D003037 ORTHO05D003659 5.2e-08 61.6 36 72.2
C05p07880 Brassica napus HOM05D003037 ORTHO05D003659 5.2e-08 61.6 58 51.7
BolC4t24107H Brassica oleracea HOM05D003037 ORTHO05D003659 5.2e-08 61.6 36 72.2
BolC5t29539H Brassica oleracea HOM05D003037 ORTHO05D003659 5.2e-08 61.6 58 51.7
AUR62014220 Chenopodium quinoa HOM05D003037 ORTHO05D003659 5.2e-08 61.6 42 61.9
AUR62041122 Chenopodium quinoa HOM05D003037 ORTHO05D003659 5.2e-08 61.6 42 61.9
QL02p100083 Quercus lobata HOM05D003037 ORTHO05D003659 5.2e-08 61.6 67 55.2
RcHm_v2.0_Chr1g0321271 Rosa chinensis HOM05D003037 ORTHO05D003659 5.2e-08 61.6 43 62.8
AL2G17980 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 6.8e-08 61.2 42 61.9
AT1G58080 Arabidopsis thaliana HOM05D003037 ORTHO05D003659 6.8e-08 61.2 42 61.9
A03p66520 Brassica napus HOM05D003037 ORTHO05D003659 6.8e-08 61.2 36 72.2
A09p18570 Brassica napus HOM05D003037 ORTHO05D003659 6.8e-08 61.2 36 72.2
BraA03t15703Z Brassica rapa HOM05D003037 ORTHO05D003659 6.8e-08 61.2 36 72.2
CANSAT35G1041 Cannabis sativa HOM05D003037 ORTHO05D003659 6.8e-08 61.2 45 66.7
unitig_747.g21264 Utricularia gibba HOM05D003037 ORTHO05D003659 6.8e-08 61.2 39 69.2
BcaC05g24849 Brassica carinata HOM05D003037 ORTHO05D003659 8.9e-08 60.8 58 51.7
Thhalv10007791m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 8.9e-08 60.8 39 66.7
Sp1g08400 Schrenkiella parvula HOM05D003037 ORTHO05D003659 8.9e-08 60.8 39 66.7
THA.LOC104816806 Tarenaya hassleriana HOM05D003037 ORTHO05D003659 8.9e-08 60.8 43 60.5
CAN.G798.49 Capsicum annuum HOM05D003037 ORTHO05D003659 1.2e-07 60.5 40 65.0
QL02p100067 Quercus lobata HOM05D003037 ORTHO05D003659 1.2e-07 60.5 67 53.7
arahy.Tifrunner.gnm1.ann1.HXJ4DU Arachis hypogaea HOM05D003037 ORTHO05D001609 1.5e-07 60.1 36 75.0
MSTRG.16497 Avicennia marina HOM05D003037 ORTHO05D003659 1.5e-07 60.1 43 62.8
BraA09t37483Z Brassica rapa HOM05D003037 ORTHO05D003659 1.5e-07 60.1 36 72.2
arahy.Tifrunner.gnm1.ann1.4H8VJF Arachis hypogaea HOM05D003037 ORTHO05D003659 2.0e-07 59.7 61 52.5
A01p28170 Brassica napus HOM05D003037 ORTHO05D003659 2.0e-07 59.7 36 69.4
C01p35730 Brassica napus HOM05D003037 ORTHO05D003659 2.0e-07 59.7 36 69.4
C09p23190 Brassica napus HOM05D003037 ORTHO05D003659 2.0e-07 59.7 36 69.4
BolC1t03532H Brassica oleracea HOM05D003037 ORTHO05D003659 2.0e-07 59.7 36 69.4
BolC9t55238H Brassica oleracea HOM05D003037 ORTHO05D003659 2.0e-07 59.7 36 69.4
BraA01t02947Z Brassica rapa HOM05D003037 ORTHO05D003659 2.0e-07 59.7 36 69.4
CARHR053980 Cardamine hirsuta HOM05D003037 ORTHO05D003659 2.0e-07 59.7 42 61.9
Thhalv10023501m.g Eutrema salsugineum HOM05D003037 ORTHO05D003659 2.0e-07 59.7 42 59.5
Sp2g05490 Schrenkiella parvula HOM05D003037 ORTHO05D003659 2.6e-07 59.3 43 58.1
SGA_v2.0_scaffold8G04432 Striga asiatica HOM05D003037 ORTHO05D003659 2.6e-07 59.3 67 49.3
Hma1.2p1_1108F.1_g257915 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 3.4e-07 58.9 45 64.4
Hma1.2p1_1108F.1_g257920 Hydrangea macrophylla HOM05D003037 ORTHO05D003659 3.4e-07 58.9 45 64.4
RcHm_v2.0_Chr1g0321261 Rosa chinensis HOM05D003037 ORTHO05D003659 3.4e-07 58.9 34 70.6
TWI12G1167 Tripterygium wilfordii HOM05D003037 ORTHO05D003659 3.4e-07 58.9 34 76.5
AL2G18010 Arabidopsis lyrata HOM05D003037 ORTHO05D003659 4.4e-07 58.5 42 57.1
arahy.Tifrunner.gnm1.ann1.54ACLN Arachis hypogaea HOM05D003037 ORTHO05D003659 4.4e-07 58.5 36 66.7
A06p06470 Brassica napus HOM05D003037 ORTHO05D003659 4.4e-07 58.5 58 50.0
BraA06t23858Z Brassica rapa HOM05D003037 ORTHO05D003659 4.4e-07 58.5 58 50.0
Cpa.g.sc30.45 Carica papaya HOM05D003037 ORTHO05D003659 4.4e-07 58.5 67 50.7
PGR142G1570 Punica granatum HOM05D003037 ORTHO05D003659 5.8e-07 58.2 67 50.7
Carub.0002s0655 Capsella rubella HOM05D003037 ORTHO05D003659 7.6e-07 57.8 65 49.2
HanXRQChr07g0187481 Helianthus annuus HOM05D003037 ORTHO05D003659 9.9e-07 57.4 43 62.8
RcHm_v2.0_Chr1g0321241 Rosa chinensis HOM05D003037 ORTHO05D003659 1.7e-06 56.6 43 58.1
Lsat_1_v5_gn_9_120700 Lactuca sativa HOM05D003037 ORTHO05D003659 3.8e-06 55.5 43 62.8
RcHm_v2.0_Chr1g0321211 Rosa chinensis HOM05D003037 ORTHO05D003659 3.8e-06 55.5 43 55.8
Thecc.02G025100 Theobroma cacao HOM05D003037 ORTHO05D003659 3.8e-06 55.5 67 50.7
Aa31LG1G5170 Aethionema arabicum HOM05D003037 ORTHO05D003659 4.9e-06 55.1 43 55.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.4e-06 54.7 42 57.1
HPP92_003892 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.4e-06 54.7 42 57.1
MSTRG.27854 Avicennia marina HOM05D003037 ORTHO05D003659 8.4e-06 54.3 67 46.3
ECA236G0695 Erigeron canadensis HOM05D003037 ORTHO05D003659 8.4e-06 54.3 35 71.4


User provided reference genes

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