Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 3.5e-61 238.0 115 100.0
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.1e-59 233.0 115 98.3
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 2.5e-51 205.3 114 86.0
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 3.3e-51 204.9 114 85.1
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 5.6e-51 204.1 116 84.5
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.8e-50 201.1 114 83.3
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 83.6
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.1e-49 199.9 116 83.6
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.4e-49 198.7 114 83.3
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 5.3e-49 197.6 114 81.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 6.9e-49 197.2 114 83.3
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 9.0e-49 196.8 115 81.7
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.2e-48 196.4 114 82.5
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 79.8
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.0e-48 195.7 114 80.7
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.0e-48 195.7 114 80.7
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.6e-48 195.3 114 80.7
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.4e-48 194.9 114 80.7
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 4.4e-48 194.5 114 81.6
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 4.4e-48 194.5 112 80.4
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 4.4e-48 194.5 114 81.6
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 7.6e-48 193.7 114 82.5
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 7.6e-48 193.7 114 79.8
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 9.9e-48 193.4 114 79.8
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 9.9e-48 193.4 114 79.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 9.9e-48 193.4 114 82.5
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 9.9e-48 193.4 114 82.5
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 9.9e-48 193.4 114 82.5
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.2e-47 192.2 114 80.7
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.2e-47 192.2 114 80.7
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.2e-47 192.2 114 80.7
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.2e-47 192.2 114 79.8
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.9e-47 191.8 114 78.1
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.9e-47 191.8 114 80.7
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.9e-47 191.0 116 78.4
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 6.4e-47 190.7 114 78.9
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 6.4e-47 190.7 114 78.9
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 6.4e-47 190.7 114 82.5
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 8.4e-47 190.3 114 78.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.4e-46 189.5 114 78.1
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.4e-46 189.5 114 78.9
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 77.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.9e-46 189.1 113 79.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 78.9
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 78.9
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 78.9
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 78.9
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.9e-46 189.1 114 80.7
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.9e-46 189.1 116 80.2
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 1.9e-46 189.1 124 75.8
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 2.4e-46 188.7 112 80.4
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.4e-46 188.7 112 79.5
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 4.2e-46 188.0 116 80.2
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 4.2e-46 188.0 116 80.2
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.4e-46 187.6 113 77.9
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 7.1e-46 187.2 114 80.7
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.1e-46 187.2 113 80.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.6e-45 186.0 114 77.2
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 2.1e-45 185.7 122 74.6
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 3.5e-45 184.9 114 76.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.5e-45 184.9 113 77.9
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.5e-45 184.9 113 77.9
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 4.6e-45 184.5 115 80.0
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 4.6e-45 184.5 115 80.0
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.0e-45 184.1 114 76.3
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 6.0e-45 184.1 115 76.5
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 6.0e-45 184.1 115 76.5
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 6.0e-45 184.1 115 76.5
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 6.0e-45 184.1 115 76.5
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 6.0e-45 184.1 114 75.4
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.9e-45 183.7 113 78.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.0e-44 183.3 115 76.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.0e-44 183.3 115 76.5
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.3e-44 183.0 115 76.5
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 1.3e-44 183.0 113 77.9
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.3e-44 183.0 113 80.5
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.7e-44 182.6 115 75.7
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.7e-44 182.6 115 75.7
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.3e-44 182.2 115 75.7
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.3e-44 182.2 115 75.7
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.3e-44 182.2 115 75.7
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 2.3e-44 182.2 113 76.1
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.0e-44 181.8 114 76.3
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.0e-44 181.8 115 75.7
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.0e-44 181.8 112 77.7
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 3.0e-44 181.8 115 76.5
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 3.9e-44 181.4 115 76.5
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 5.1e-44 181.0 115 74.8
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 5.1e-44 181.0 115 74.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 5.1e-44 181.0 113 79.6
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 5.1e-44 181.0 113 79.6
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 5.1e-44 181.0 113 79.6
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 5.1e-44 181.0 113 79.6
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 5.1e-44 181.0 113 79.6
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 5.1e-44 181.0 113 79.6
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.1e-43 179.9 118 72.0
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.9e-43 179.1 114 78.1
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 2.5e-43 178.7 110 76.4
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 2.5e-43 178.7 113 78.8
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 4.3e-43 177.9 115 73.9
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.3e-43 177.9 115 73.0
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 4.3e-43 177.9 114 75.4
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 7.3e-43 177.2 113 74.3
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 7.3e-43 177.2 113 75.2
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 7.3e-43 177.2 113 75.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.8e-42 175.3 114 77.2
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.4e-41 172.9 114 72.8
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.8e-41 172.6 126 69.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.4e-41 172.2 111 75.7
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 4.0e-41 171.4 112 71.4
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.6e-40 168.7 98 79.6
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 5.8e-40 167.5 114 74.6
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 5.8e-40 167.5 163 56.4
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.3e-39 166.4 131 63.4
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.9e-39 165.2 103 72.8
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.9e-39 165.2 113 71.7
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 4.9e-39 164.5 114 70.2
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.9e-39 164.5 99 78.8
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.4e-39 164.1 96 79.2
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.4e-39 164.1 96 79.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 2.4e-38 162.2 114 71.1
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 1.8e-36 156.0 97 75.3
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 2.3e-36 155.6 98 76.5
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 8.7e-36 153.7 115 69.6
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.5e-35 152.9 94 79.8
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.5e-35 152.9 121 65.3
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 3.3e-35 151.8 96 76.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 4.8e-34 147.9 95 73.7
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 3.1e-33 145.2 114 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.2e-32 143.3 113 60.2
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 4.5e-32 141.4 111 60.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.9e-31 138.7 93 73.1
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 3.2e-30 135.2 116 56.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 3.9e-28 128.3 93 66.7
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.4e-22 109.8 112 53.6
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.2e-21 106.7 65 81.5
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.2e-21 106.7 64 81.2
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.7e-21 105.5 80 66.2
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 7.9e-21 104.0 68 80.9
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.3e-20 103.2 63 79.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.8e-20 102.8 64 82.8
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 6.7e-20 100.9 67 76.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.1e-19 100.1 60 83.3
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.6e-18 96.3 71 73.2
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 2.2e-18 95.9 60 80.0
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.8e-18 95.5 61 75.4
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 3.7e-18 95.1 50 80.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 4.8e-18 94.7 49 81.6
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 6.3e-18 94.4 87 58.6
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 2.4e-17 92.4 49 77.6
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 2.6e-16 89.0 138 39.9
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.4e-16 88.6 51 74.5
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.4e-16 88.6 49 77.6
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 3.4e-16 88.6 71 63.4
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.0e-15 87.0 124 41.1
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 6.3e-10 67.8 72 52.8
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.4e-09 66.6 48 66.7
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 9.1e-09 63.9 35 85.7
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-06 57.0 99 39.4


User provided reference genes

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