Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 0.0e+00 1159.4 602 100.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.1e-218 762.7 598 68.1
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 5.3e-201 704.9 626 62.3
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.3e-194 683.7 628 61.6
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 6.3e-194 681.4 603 62.2
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.5e-192 676.8 615 61.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.4e-192 675.6 627 60.0
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.8e-191 672.2 631 61.0
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 6.5e-191 671.4 664 56.9
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 8.5e-191 671.0 627 60.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.1e-190 670.6 618 62.0
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.9e-190 669.8 609 61.4
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.5e-190 669.5 618 61.0
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 3.2e-190 669.1 602 61.0
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 7.2e-190 667.9 632 60.4
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.4e-188 663.7 624 59.9
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.4e-188 663.7 618 60.4
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.8e-188 663.3 618 60.4
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 6.7e-188 661.4 611 58.8
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 8.8e-188 661.0 627 58.1
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.1e-187 660.6 608 59.7
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.7e-187 658.3 630 58.3
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 5.7e-187 658.3 615 59.3
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 7.4e-187 657.9 638 59.6
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 9.7e-187 657.5 611 59.2
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.7e-186 656.8 622 58.2
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.4e-185 653.7 618 59.1
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.4e-185 653.7 630 58.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.3e-185 651.7 622 58.7
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.3e-183 647.1 616 58.6
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.2e-183 646.4 628 57.8
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 5.0e-183 645.2 612 58.5
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 4.2e-182 642.1 614 58.5
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 1.6e-181 640.2 605 57.4
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 4.7e-181 638.6 596 59.4
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 6.1e-181 638.3 624 57.9
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 6.7e-180 634.8 635 57.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.6e-179 632.9 616 60.1
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.6e-179 632.9 605 57.4
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 4.8e-178 628.6 629 57.4
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.8e-177 626.7 598 58.7
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 4.1e-177 625.5 593 57.8
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 9.1e-177 624.4 622 56.6
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.2e-176 624.0 609 58.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.6e-176 623.6 605 58.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.7e-176 622.9 587 58.8
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.7e-176 622.9 635 55.6
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.7e-176 622.9 612 56.0
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 3.5e-176 622.5 617 55.9
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 3.5e-176 622.5 602 56.5
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 3.5e-176 622.5 587 58.3
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.5e-176 622.5 611 55.8
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 7.7e-176 621.3 618 57.0
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.0e-175 620.9 610 57.2
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 3.8e-175 619.0 595 56.8
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.1e-174 617.5 596 57.6
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 3.2e-174 615.9 608 57.4
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 3.2e-174 615.9 588 58.0
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.6e-173 613.6 608 56.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 6.1e-173 611.7 608 56.1
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.1e-173 611.7 666 55.4
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.4e-172 610.5 631 56.7
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.4e-172 610.5 595 57.5
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.0e-172 609.0 630 55.2
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 8.8e-172 607.8 604 56.0
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 8.8e-172 607.8 630 56.2
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.4e-171 605.9 614 55.2
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 5.7e-171 605.1 609 55.7
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 7.5e-171 604.7 591 56.9
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-170 602.8 605 55.7
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.8e-170 602.8 616 55.5
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.8e-170 602.8 614 55.0
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 4.8e-170 602.1 600 56.2
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 6.3e-170 601.7 588 57.5
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 8.3e-170 601.3 609 55.8
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-169 600.9 610 55.1
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 3.1e-169 599.4 605 55.5
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.2e-168 597.4 595 55.5
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 3.5e-168 595.9 618 54.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 3.5e-168 595.9 618 54.7
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 4.5e-168 595.5 605 55.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.5e-166 589.7 619 53.6
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 3.2e-166 589.3 606 55.4
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.1e-165 586.6 581 57.0
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-164 583.9 588 56.1
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 6.8e-164 581.6 584 54.8
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 6.8e-164 581.6 634 53.8
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.2e-162 576.6 599 55.4
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 6.3e-162 575.1 613 54.0
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.5e-158 563.9 633 51.0
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 4.4e-155 552.4 583 52.3
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.7e-154 550.4 626 51.9
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.7e-154 550.4 583 53.7
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.2e-154 550.1 506 60.1
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.8e-153 547.0 597 52.9
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 4.1e-153 545.8 628 51.4
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.5e-152 542.7 470 65.1
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.7e-151 540.4 585 50.9
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.5e-150 537.3 622 51.4
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.3e-150 536.2 630 53.5
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.6e-150 535.4 622 51.1
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 6.2e-149 531.9 614 50.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.4e-147 526.2 634 50.2
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.7e-146 522.7 594 51.9
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 4.7e-141 505.8 561 52.4
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 6.8e-140 501.9 593 50.3
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 5.8e-139 498.8 493 56.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.5e-126 456.8 599 49.2
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 5.2e-124 449.1 473 54.8
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.2e-120 438.0 586 44.4
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.0e-107 394.0 626 41.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.0e-107 394.0 622 40.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.0e-107 394.0 592 43.2
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.1e-96 357.5 504 45.2
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.5e-94 350.5 385 51.7
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.3e-86 323.6 373 52.0
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 4.6e-80 303.1 263 63.1
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 3.7e-77 293.5 563 37.5
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 4.8e-69 266.5 352 46.9
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.1e-68 263.8 343 47.2
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 9.1e-68 262.3 275 54.5
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 3.2e-65 253.8 369 41.7
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.8e-60 238.0 227 55.9
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.6e-56 224.9 200 59.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.7e-53 214.9 291 40.2
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.1e-52 210.7 250 48.8
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.2e-51 208.8 281 42.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.7e-50 204.9 119 84.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 5.5e-49 199.9 204 51.0
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 9.5e-49 199.1 154 68.8
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.4e-44 185.3 154 62.3
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.7e-42 178.3 225 41.3
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 5.6e-41 173.3 196 46.4
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.2e-40 172.2 227 43.2
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.0e-38 164.9 141 63.1
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.2e-37 161.4 289 33.6
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.4e-36 157.9 100 78.0
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.4e-31 142.1 119 60.5
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 1.4e-31 142.1 130 62.3
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.0e-28 129.8 125 62.4
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.0e-26 125.9 186 44.1
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.3e-26 125.6 92 59.8
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 5.0e-26 123.6 87 73.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.1e-25 122.5 87 73.6
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.2e-24 119.0 65 84.6
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.7e-24 117.1 163 47.2
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 6.2e-24 116.7 113 62.8
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-23 115.5 175 42.9
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 6.8e-23 113.2 216 35.6
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 4.4e-22 110.5 87 70.1
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.5e-22 109.8 132 48.5
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.9e-22 109.4 132 49.2
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 8.3e-21 106.3 74 75.7
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.9e-20 105.1 70 72.9
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.2e-16 92.4 78 65.4
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.6e-16 92.0 178 30.9
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 2.4e-15 88.2 107 47.7
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 2.6e-14 84.7 69 63.8
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.1e-12 79.3 139 38.8
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 9.2e-12 76.3 168 32.7
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.7e-10 72.0 115 43.5
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 3.1e-07 61.2 41 65.9


User provided reference genes

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