Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 6.2e-88 327.4 161 100.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.6e-56 223.0 155 67.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.6e-56 221.9 157 69.4
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 8.4e-53 210.7 153 64.1
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 9.3e-52 207.2 158 64.6
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.0e-50 203.8 157 64.3
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.8e-50 203.0 161 60.9
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.0e-50 202.2 155 63.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 6.7e-50 201.1 163 62.6
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.5e-49 199.1 159 61.6
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.3e-49 198.4 158 61.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.3e-48 196.8 161 60.2
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.2e-48 194.5 161 60.2
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 8.1e-48 194.1 161 60.2
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.6e-46 189.1 161 59.0
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.9e-45 185.7 159 60.4
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 3.8e-45 185.3 158 57.6
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 4.9e-45 184.9 153 61.4
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 4.9e-45 184.9 136 64.7
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.9e-44 183.0 157 59.2
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.2e-43 180.3 151 57.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 7.9e-43 177.6 151 57.0
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.0e-42 177.2 162 58.6
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.3e-42 176.8 159 54.7
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.3e-42 176.8 159 57.9
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.3e-42 176.8 159 57.9
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.8e-42 176.4 151 62.3
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.3e-42 176.0 134 61.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 3.0e-42 175.6 134 62.7
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 3.9e-42 175.3 154 57.8
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.1e-42 174.9 159 55.3
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 8.7e-42 174.1 154 56.5
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.1e-41 173.7 162 58.0
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.1e-41 173.7 153 58.2
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.5e-41 173.3 154 57.1
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.5e-41 173.3 158 58.2
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.5e-41 172.6 153 55.6
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 5.6e-41 171.4 159 54.7
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.4e-41 171.0 167 53.3
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 7.4e-41 171.0 140 64.3
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 7.4e-41 171.0 158 57.6
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.3e-40 170.2 165 55.2
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.1e-40 169.5 160 56.9
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.7e-40 168.7 127 63.8
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 8.2e-40 167.5 140 62.9
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.1e-39 167.2 156 57.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.1e-39 167.2 160 55.0
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.5e-38 163.3 164 54.3
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.0e-38 162.9 139 59.7
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.4e-38 162.2 152 52.0
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 4.5e-38 161.8 118 65.3
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 1.0e-37 160.6 174 51.1
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 3.8e-37 158.7 160 53.8
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.8e-37 158.7 144 56.2
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 4.9e-37 158.3 139 57.6
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 8.4e-37 157.5 157 54.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.1e-36 157.1 139 59.0
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 4.2e-36 155.2 139 56.1
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 2.7e-35 152.5 151 54.3
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 3.0e-34 149.1 147 51.7
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.9e-34 148.7 151 53.0
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.1e-34 148.3 161 49.7
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 5.1e-34 148.3 150 52.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 6.7e-34 147.9 136 58.8
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 3.3e-33 145.6 144 59.7
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 7.4e-33 144.4 145 49.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.3e-32 143.7 147 52.4
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.3e-32 143.7 132 55.3
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 2.2e-32 142.9 171 46.8
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 2.8e-32 142.5 171 46.8
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.7e-32 142.1 138 54.3
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.7e-32 142.1 154 53.2
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 6.3e-32 141.4 95 66.3
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.1e-31 140.6 157 47.1
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 5.3e-31 138.3 168 48.8
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.5e-30 136.7 169 47.9
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 3.4e-30 135.6 91 64.8
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.0e-29 134.0 134 53.0
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.9e-29 132.5 148 50.7
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.5e-29 131.3 145 45.5
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 3.2e-28 129.0 146 45.2
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 7.2e-28 127.9 145 51.7
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.2e-27 127.1 133 49.6
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 2.7e-27 125.9 119 55.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 2.3e-26 122.9 121 53.7
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 3.0e-26 122.5 142 47.2
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 3.9e-26 122.1 131 48.1
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 5.1e-26 121.7 119 51.3
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.9e-25 119.8 145 46.9
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 3.3e-25 119.0 154 44.8
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 4.3e-25 118.6 119 51.3
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 5.7e-25 118.2 145 49.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 5.7e-25 118.2 138 47.1
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 9.7e-25 117.5 145 42.1
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 6.3e-24 114.8 136 47.8
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.1e-23 114.0 138 45.7
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.1e-23 114.0 139 45.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.1e-23 114.0 145 42.8
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.4e-23 113.6 140 45.0
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.8e-23 113.2 141 44.7
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 1.8e-23 113.2 131 45.8
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.8e-23 113.2 163 44.8
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.4e-23 112.8 142 47.2
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 4.1e-23 112.1 137 45.3
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.5e-22 110.2 137 44.5
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.5e-22 110.2 137 43.8
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.5e-22 110.2 141 45.4
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 4.5e-22 108.6 134 41.0
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 4.5e-22 108.6 134 41.0
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 5.9e-22 108.2 84 60.7
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 7.7e-22 107.8 139 41.0
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.7e-22 107.8 156 42.9
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.3e-21 107.1 121 47.1
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 8.5e-21 104.4 85 57.6
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.1e-20 104.0 102 52.9
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 7.9e-19 97.8 141 42.6
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.5e-17 93.6 137 38.7
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.4e-17 92.0 140 38.6
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.4e-17 92.0 131 42.7
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.2e-16 89.7 120 43.3
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 4.8e-16 88.6 120 42.5
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 6.3e-16 88.2 120 42.5
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 6.3e-16 88.2 120 42.5
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 6.3e-16 88.2 120 42.5
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 8.2e-16 87.8 148 36.5
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.1e-15 87.4 137 38.7
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 5.3e-15 85.1 138 40.6
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 5.3e-15 85.1 53 64.2
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 6.9e-15 84.7 119 43.7
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.5e-14 83.6 121 43.0
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.3e-13 80.5 130 40.8
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 1.3e-13 80.5 80 56.2
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 1.7e-13 80.1 149 33.6
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 3.8e-13 79.0 135 38.5
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 4.2e-12 75.5 122 38.5
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.2e-11 73.9 130 40.0
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.8e-10 70.1 135 34.1
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-09 67.4 41 68.3
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.6e-09 66.2 129 38.8
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.7e-09 65.1 82 47.6
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.7e-08 63.5 79 41.8
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.7e-08 63.5 79 43.0
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.7e-08 62.4 38 65.8
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 4.8e-08 62.0 38 65.8
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.6e-06 57.0 97 34.0


User provided reference genes

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