Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 6.9e-59 230.3 108 100.0
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 6.5e-41 170.6 101 77.2
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.9e-40 169.1 101 77.2
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.5e-40 167.5 101 76.2
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 7.1e-40 167.2 101 77.2
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.5e-39 164.9 103 72.8
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.6e-39 164.5 103 75.7
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 6.0e-39 164.1 102 76.5
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 6.0e-39 164.1 104 75.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.0e-38 163.3 104 74.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.8e-38 162.5 106 71.7
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.3e-38 162.2 102 77.5
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.9e-38 161.4 103 72.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.1e-38 161.0 102 74.5
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 6.7e-38 160.6 102 74.5
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 8.7e-38 160.2 102 75.5
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.1e-37 159.8 103 71.8
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.9e-37 159.1 98 72.4
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.4e-37 157.1 102 73.5
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 9.7e-37 156.8 103 70.9
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 9.7e-37 156.8 101 69.3
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 2.2e-36 155.6 102 73.5
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.8e-36 155.2 101 73.3
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 4.8e-36 154.5 104 68.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.4e-35 152.9 100 73.0
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.4e-35 152.9 100 73.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.8e-35 152.5 91 78.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 3.1e-35 151.8 104 68.3
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.1e-35 151.4 102 69.6
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 4.1e-35 151.4 105 71.4
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 6.9e-35 150.6 106 67.9
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 6.9e-35 150.6 104 68.3
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 6.9e-35 150.6 104 66.3
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 9.0e-35 150.2 101 68.3
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.2e-34 149.8 102 71.6
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.5e-34 149.4 102 69.6
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.0e-34 149.1 101 68.3
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.6e-34 148.7 101 69.3
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 3.4e-34 148.3 99 70.7
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 4.5e-34 147.9 101 65.3
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 7.6e-34 147.1 104 65.4
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.0e-33 146.7 101 66.3
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.0e-33 146.7 102 69.6
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.0e-33 146.7 102 68.6
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.0e-33 146.7 104 68.3
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.3e-33 146.4 103 68.9
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.3e-33 146.4 103 68.9
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.3e-33 146.4 102 70.6
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.7e-33 146.0 100 72.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.7e-33 146.0 101 69.3
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.7e-33 146.0 104 66.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.7e-33 146.0 104 66.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.7e-33 146.0 102 67.6
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.9e-33 145.2 104 66.3
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.9e-33 145.2 102 67.6
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.8e-33 144.8 104 66.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.8e-33 144.8 104 66.3
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 3.8e-33 144.8 105 70.5
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 8.5e-33 143.7 92 73.9
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 8.5e-33 143.7 104 66.3
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 8.5e-33 143.7 101 66.3
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.1e-32 143.3 103 65.0
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.9e-32 142.5 104 68.3
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.5e-32 142.1 102 69.6
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.5e-32 142.1 104 68.3
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 2.5e-32 142.1 104 64.4
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.5e-32 142.1 102 64.7
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 4.2e-32 141.4 102 69.6
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 5.5e-32 141.0 101 65.3
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 7.2e-32 140.6 99 66.7
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 9.3e-32 140.2 104 65.4
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.2e-31 139.8 101 66.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.2e-31 139.8 102 69.6
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.6e-31 139.4 103 64.1
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.1e-31 139.0 99 66.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.1e-31 139.0 106 64.2
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.7e-31 138.7 92 73.9
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 3.6e-31 138.3 99 66.7
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 4.6e-31 137.9 104 63.5
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 7.9e-31 137.1 99 65.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 7.9e-31 137.1 103 67.0
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.4e-30 136.3 99 66.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.4e-30 136.3 104 61.5
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 3.0e-30 135.2 102 63.7
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.0e-30 135.2 97 61.9
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.0e-30 135.2 97 61.9
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 3.0e-30 135.2 102 64.7
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.9e-30 134.8 106 63.2
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.9e-30 134.8 106 63.2
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 6.7e-30 134.0 108 62.0
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 6.7e-30 134.0 102 62.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.1e-29 133.3 101 59.4
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.5e-29 132.9 102 64.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.9e-29 132.5 92 64.1
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 1.9e-29 132.5 107 62.6
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.5e-29 132.1 102 64.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 2.5e-29 132.1 106 63.2
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 3.3e-29 131.7 102 65.7
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.2e-28 129.0 90 63.3
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.2e-28 129.0 81 70.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.8e-28 128.6 99 63.6
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.8e-28 128.6 102 61.8
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 3.7e-28 128.3 101 58.4
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 4.8e-28 127.9 92 68.5
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 8.2e-28 127.1 102 61.8
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 8.2e-28 127.1 74 71.6
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.1e-27 126.7 99 62.6
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.4e-27 126.3 91 67.0
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.8e-27 125.9 102 58.8
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.8e-27 125.9 91 64.8
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.1e-27 124.8 90 63.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 6.9e-27 124.0 102 60.8
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 6.9e-27 124.0 81 71.6
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.2e-26 123.2 75 72.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.0e-26 122.5 73 71.2
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 3.4e-26 121.7 90 60.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 5.9e-26 120.9 105 60.0
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.3e-25 119.8 101 56.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.3e-25 119.8 101 56.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.2e-25 119.0 96 62.5
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 2.9e-25 118.6 132 51.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.9e-25 118.6 93 63.4
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.9e-25 118.6 90 62.2
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 5.0e-25 117.9 102 58.8
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.4e-24 116.3 91 59.3
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.5e-24 114.4 92 62.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 6.7e-22 107.5 93 55.9
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.6e-21 105.5 98 51.0
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.8e-20 101.3 50 84.0
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.8e-19 99.4 82 59.8
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.9e-19 97.4 76 67.1
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 2.2e-17 92.4 100 51.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.1e-16 90.1 76 60.5
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 1.1e-16 90.1 81 59.3
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.5e-16 89.0 80 60.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.2e-16 88.2 102 52.9
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 4.2e-16 88.2 77 62.3
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 6.1e-15 84.3 81 54.3
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.8e-14 82.8 74 54.1
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.9e-14 81.6 78 53.8
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.1e-13 80.1 92 48.9
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.6e-13 79.0 110 40.9
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.3e-12 76.6 75 53.3
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 6.3e-12 74.3 53 64.2
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.4e-11 73.2 110 39.1
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.0e-10 69.3 65 49.2
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.5e-10 68.2 40 70.0
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 5.9e-10 67.8 85 40.0
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 4.2e-08 61.6 42 64.3
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.2e-07 60.1 54 61.1
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.2e-07 60.1 54 61.1
TAR048G0001 Trochodendron aralioides HOM05D032931 ORTHO05D005600 1.6e-07 59.7 42 76.2
TAR636G2680 Trochodendron aralioides HOM05D032931 ORTHO05D005600 1.6e-07 59.7 42 76.2


User provided reference genes

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