Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01439 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 1.8e-78 295.8 148 100.0
TAR628G1418 Trochodendron aralioides HOM05D008012 ORTHO05D010154 1.5e-27 126.7 139 48.9
vmacro21334 Vaccinium macrocarpon HOM05D008012 ORTHO05D010154 1.9e-27 126.3 111 55.9
Prupe.1G530900 Prunus persica HOM05D008012 ORTHO05D010154 9.5e-27 124.0 103 59.2
Rhsim06G0072100 Rhododendron simsii HOM05D008012 ORTHO05D010154 1.6e-26 123.2 120 51.7
Dinv42620 Davidia involucrata HOM05D008012 ORTHO05D010154 6.2e-26 121.3 132 48.5
GSVIVG01009167001 Vitis vinifera HOM05D008012 ORTHO05D010154 1.4e-25 120.2 138 49.3
Aqoxy5G01307 Aquilegia oxysepala HOM05D008012 ORTHO05D010154 3.4e-24 115.5 112 49.1
Cfa013683 Carpinus fangiana HOM05D008012 ORTHO05D010154 3.4e-24 115.5 140 46.4
CSS0008352 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 5.8e-24 114.8 140 45.0
Hund16860 Selenicereus undatus HOM05D008012 ORTHO05D010154 2.2e-23 112.8 149 40.9
CANSAT25G2577 Cannabis sativa HOM05D008012 ORTHO05D010154 4.9e-23 111.7 119 45.4
CiPaw.07G166200 Carya illinoinensis HOM05D008012 ORTHO05D010154 6.4e-23 111.3 125 46.4
Sc23g0000670 Simmondsia chinensis HOM05D008012 ORTHO05D010154 8.3e-23 110.9 111 54.1
Atru.chr13.1021 Acer truncatum HOM05D008012 ORTHO05D010154 1.1e-22 110.5 105 51.4
Lalb_Chr23g0270051 Lupinus albus HOM05D008012 ORTHO05D010154 1.9e-22 109.8 81 56.8
Ciclev10002397m.g Citrus clementina HOM05D008012 ORTHO05D010154 2.4e-22 109.4 147 41.5
Dinv44854 Davidia involucrata HOM05D008012 ORTHO05D010154 2.4e-22 109.4 132 43.9
Gohir.D05G222500 Gossypium hirsutum HOM05D008012 ORTHO05D010154 4.1e-22 108.6 136 44.9
Gorai.009G229900 Gossypium raimondii HOM05D008012 ORTHO05D010154 4.1e-22 108.6 136 44.9
COL.COLO4_35233 Corchorus olitorius HOM05D008012 ORTHO05D010154 5.4e-22 108.2 103 51.5
Thecc.08G070000 Theobroma cacao HOM05D008012 ORTHO05D010154 7.0e-22 107.8 83 56.6
Lj1g0025426 Lotus japonicus HOM05D008012 ORTHO05D010154 9.2e-22 107.5 130 43.8
Lalb_Chr11g0065041 Lupinus albus HOM05D008012 ORTHO05D010154 1.2e-21 107.1 135 41.5
Cpa.g.sc21.9 Carica papaya HOM05D008012 ORTHO05D010154 2.7e-21 105.9 113 45.1
Gohir.A05G219900 Gossypium hirsutum HOM05D008012 ORTHO05D010154 2.7e-21 105.9 126 43.7
Eucgr.F02139 Eucalyptus grandis HOM05D008012 ORTHO05D010154 3.5e-21 105.5 159 39.0
PGR031G3518 Punica granatum HOM05D052328 ORTHO05D010154 3.5e-21 105.5 111 45.9
AUR62019041 Chenopodium quinoa HOM05D008012 ORTHO05D010154 7.8e-21 104.4 112 43.8
MBI02_g32605_MAGBIO Magnolia biondii HOM05D008012 ORTHO05D010154 1.0e-20 104.0 151 37.1
FAN04G0544 Fragaria x ananassa HOM05D008012 ORTHO05D010154 3.0e-20 102.4 97 47.4
RcHm_v2.0_Chr7g0236831 Rosa chinensis HOM05D008012 ORTHO05D010154 3.9e-20 102.1 120 45.8
FvH4_5g35450 Fragaria vesca HOM05D008012 ORTHO05D010154 5.1e-20 101.7 97 48.5
FAN08G2109 Fragaria x ananassa HOM05D008012 ORTHO05D010154 5.1e-20 101.7 97 48.5
Hma1.2p1_0125F.1_g058940 Hydrangea macrophylla HOM05D008012 ORTHO05D010154 6.6e-20 101.3 132 42.4
FAN18G1410 Fragaria x ananassa HOM05D008012 ORTHO05D010154 8.6e-20 100.9 97 48.5
VMungo1309G2208 Vigna mungo HOM05D008012 ORTHO05D010154 1.9e-19 99.8 106 47.2
EL10Ac1g01062 Beta vulgaris HOM05D008012 ORTHO05D010154 4.3e-19 98.6 140 38.6
Duzib093G0747 Durio zibethinus HOM05D008012 ORTHO05D010154 9.5e-19 97.4 130 40.0
Glyma.04G091500 Glycine max HOM05D008012 ORTHO05D010154 8.1e-18 94.4 114 43.0
arahy.Tifrunner.gnm1.ann1.S7389H Arachis hypogaea HOM05D008012 ORTHO05D010154 1.1e-17 94.0 137 38.7
Nn5g29899 Nelumbo nucifera HOM05D008012 ORTHO05D010154 1.1e-17 94.0 135 43.0
Glyma.06G093300 Glycine max HOM05D008012 ORTHO05D010154 1.8e-17 93.2 114 43.9
Lsat_1_v5_gn_9_75360 Lactuca sativa HOM05D008012 ORTHO05D010154 1.8e-17 93.2 106 42.5
CDE04G1170 Ceratophyllum demersum HOM05D008012 ORTHO05D010154 3.1e-17 92.4 97 43.3
QL09p017632 Quercus lobata HOM05D008012 ORTHO05D010154 4.0e-17 92.0 120 40.8
Ca_15998_v3 Cicer arietinum L. HOM05D008012 ORTHO05D010154 6.8e-17 91.3 81 49.4
Phvul.009G144400 Phaseolus vulgaris HOM05D008012 ORTHO05D010154 1.2e-16 90.5 136 40.4
Zm00001eb038310 Zea mays HOM05D008012 ORTHO05D010154 2.0e-16 89.7 87 47.1
TPR.G26063 Trifolium pratense HOM05D008012 ORTHO05D010154 3.4e-16 89.0 106 42.5
HanXRQChr12g0378051 Helianthus annuus HOM05D008012 ORTHO05D010154 7.5e-16 87.8 134 38.1
ATR0665G245 Amborella trichopoda HOM05D008012 ORTHO05D010154 9.9e-16 87.4 131 40.5
ECA232G0711 Erigeron canadensis HOM05D008012 ORTHO05D010154 9.9e-16 87.4 144 38.9
TWI56G1079 Tripterygium wilfordii HOM05D008012 ORTHO05D010154 1.3e-15 87.0 129 39.5
HanXRQChr12g0378041 Helianthus annuus HOM05D008012 ORTHO05D010154 2.2e-15 86.3 113 40.7
Manes.18G059880 Manihot esculenta HOM05D008012 ORTHO05D010154 8.3e-15 84.3 105 41.0
PSO017G0519 Papaver somniferum HOM05D008012 ORTHO05D010154 1.1e-14 84.0 135 34.8
Psat5g046360 Pisum sativum HOM05D008012 ORTHO05D010154 5.4e-14 81.6 127 38.6
CAN.G1215.11 Capsicum annuum HOM05D008012 ORTHO05D010154 2.7e-13 79.3 103 37.9
Potri.005G156500 Populus trichocarpa HOM05D008012 ORTHO05D010154 6.0e-13 78.2 100 41.0
Medtr3g100460 Medicago truncatula HOM05D008012 ORTHO05D010154 3.0e-12 75.9 103 37.9
Actinidia10381 Actinidia chinensis HOM05D000160 ORTHO05D001344 6.6e-12 74.7 56 55.4
SEGI_09514 Sequoiadendron giganteum HOM05D008012 ORTHO05D010154 7.3e-11 71.2 83 42.2
CSS0015058 Camellia sinensis var. sinensis HOM05D008012 ORTHO05D010154 1.2e-10 70.5 48 64.6
Os08g0477800 Oryza sativa ssp. japonica HOM05D008012 ORTHO05D010154 1.2e-10 70.5 136 36.0
Sabra05G0120100 Salix brachista HOM05D008012 ORTHO05D010154 1.2e-10 70.5 100 40.0
HPP92_005977 Vanilla planifolia HOM05D061362 ORTHO05D010154 6.2e-10 68.2 68 44.1
Pp3c2_36970 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.4e-09 67.0 91 34.1
Pp3c2_36980 Physcomitrium patens HOM05D008196 ORTHO05D010261 1.4e-09 67.0 91 34.1
Sopen07g015000 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-09 65.5 50 54.0
COL.COLO4_22690 Corchorus olitorius HOM05D008012 ORTHO05D010154 1.3e-07 60.5 66 50.0
Solyc01g067040.2 Solanum lycopersicum HOM05D003060 ORTHO05D001716 1.3e-07 60.5 95 31.6
Sopen01g028750 Solanum pennellii HOM05D003060 ORTHO05D001716 1.3e-07 60.5 95 31.6
Pp3c1_4500 Physcomitrium patens HOM05D008196 ORTHO05D010261 4.9e-07 58.5 151 26.5
CiPaw.10G001900 Carya illinoinensis HOM05D008196 ORTHO05D010261 6.4e-07 58.2 81 30.9
CAN.G820.4 Capsicum annuum HOM05D003060 ORTHO05D001716 8.4e-07 57.8 64 37.5
AagrBONN_evm.TU.Sc2ySwM_344.3461 Anthoceros agrestis HOM05D008196 ORTHO05D010261 1.4e-06 57.0 132 28.0
Psat3g040360 Pisum sativum HOM05D008196 ORTHO05D010261 1.4e-06 57.0 96 28.1
SMO367G1035 Selaginella moellendorffii HOM05D008196 ORTHO05D010261 1.4e-06 57.0 138 31.2
PGSC0003DMG400022663 Solanum tuberosum HOM05D003060 ORTHO05D001716 2.4e-06 56.2 53 41.5
TPR.G8704 Trifolium pratense HOM05D008196 ORTHO05D010261 2.4e-06 56.2 70 30.0
Mapoly0028s0074 Marchantia polymorpha HOM05D008196 ORTHO05D010261 3.2e-06 55.8 139 24.5
SGA_v2.0_scaffold98G29313 Striga asiatica HOM05D003060 ORTHO05D001716 7.1e-06 54.7 90 28.9
DCAR_022153 Daucus carota HOM05D003060 ORTHO05D001716 9.2e-06 54.3 56 37.5
Dinv35820 Davidia involucrata HOM05D008196 ORTHO05D010261 9.2e-06 54.3 81 29.6


User provided reference genes

Program Settings