Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 4.9e-263 910.6 466 100.0
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 5.6e-142 508.4 449 58.4
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.5e-137 493.0 481 53.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 4.6e-136 488.8 455 54.9
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 3.9e-135 485.7 458 55.9
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 8.7e-135 484.6 417 60.9
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.9e-134 483.4 453 54.5
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 5.8e-131 471.9 463 53.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.2e-128 464.2 453 53.6
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.5e-128 462.6 453 53.4
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.3e-127 460.7 453 53.4
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 2.3e-127 459.9 478 53.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 3.0e-127 459.5 490 50.6
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 3.9e-127 459.1 441 53.7
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 6.7e-127 458.4 417 55.4
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.1e-126 457.6 467 53.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.4e-124 450.7 478 50.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 6.9e-124 448.4 454 52.2
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 6.9e-124 448.4 439 54.4
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 8.5e-122 441.4 440 54.8
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 8.5e-122 441.4 450 51.1
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 4.2e-121 439.1 464 53.4
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.1e-120 436.8 483 50.5
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.7e-120 436.4 484 50.0
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.7e-120 436.4 457 52.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.0e-119 434.5 475 49.1
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 3.0e-119 433.0 419 55.6
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.3e-118 429.5 398 55.5
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.4e-118 428.3 386 56.2
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.4e-118 428.3 386 56.2
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 7.4e-118 428.3 386 56.2
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.3e-117 427.6 490 50.2
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 3.7e-117 426.0 489 50.9
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.4e-116 424.1 445 52.8
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.8e-116 423.7 460 51.1
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 6.9e-116 421.8 428 52.6
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.5e-115 420.6 481 50.3
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.6e-115 419.9 481 50.1
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 7.7e-115 418.3 440 52.3
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.2e-114 416.8 481 50.1
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 3.8e-114 416.0 462 48.5
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 5.0e-114 415.6 454 52.0
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.1e-113 414.5 481 50.5
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.2e-113 412.9 475 49.3
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.2e-113 412.5 454 50.2
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 4.7e-112 409.1 394 56.3
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 4.7e-112 409.1 449 50.1
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.4e-111 407.5 440 49.5
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.4e-111 407.5 388 56.2
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.8e-111 407.1 460 49.1
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 8.8e-111 404.8 469 47.5
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.5e-110 404.1 454 49.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 2.0e-110 403.7 462 50.0
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.6e-110 403.3 449 49.4
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 4.4e-110 402.5 461 51.0
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 5.7e-110 402.1 454 50.7
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 7.4e-110 401.7 378 55.8
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.7e-109 400.6 466 47.9
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.2e-109 400.2 419 51.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.7e-109 399.4 441 49.9
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.8e-109 399.1 448 50.7
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.6e-107 394.0 453 47.5
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.0e-107 393.7 396 53.5
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.0e-107 393.7 493 46.2
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.0e-107 393.7 447 47.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 5.9e-107 392.1 482 47.3
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 7.7e-107 391.7 465 48.0
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 1.0e-106 391.3 480 47.3
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.3e-106 391.0 404 51.0
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.7e-106 390.6 396 53.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.9e-106 389.8 490 46.1
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 6.5e-106 388.7 495 47.3
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.9e-105 387.1 463 47.7
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.5e-105 386.7 459 48.8
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 7.2e-105 385.2 437 49.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.0e-103 379.4 395 51.9
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.5e-102 377.5 433 51.0
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.5e-102 377.5 377 53.6
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.4e-100 370.9 454 48.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 1.8e-100 370.5 433 50.1
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.8e-100 370.5 497 43.9
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 4.1e-100 369.4 479 47.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.7e-99 366.7 405 48.6
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.0e-98 364.8 386 50.0
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.9e-98 363.2 411 50.4
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 8.5e-98 361.7 395 51.1
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.5e-97 360.9 395 50.4
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 4.2e-97 359.4 455 43.5
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 4.2e-97 359.4 434 48.6
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 7.2e-97 358.6 409 50.1
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.4e-95 354.4 421 48.9
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.0e-95 352.8 339 56.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.0e-94 350.5 423 48.5
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 5.7e-94 349.0 327 55.4
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 5.7e-94 349.0 444 46.6
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 5.4e-92 342.4 414 46.6
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 5.4e-92 342.4 390 48.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 5.5e-89 332.4 463 43.2
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.4e-87 327.8 447 43.0
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 3.0e-87 326.6 396 47.0
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.2e-86 324.7 424 44.1
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.0e-86 323.9 406 45.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 5.7e-86 322.4 378 48.4
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 7.0e-84 315.5 465 42.4
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.7e-83 313.5 283 57.2
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 3.5e-83 313.2 432 43.8
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 7.7e-83 312.0 459 41.4
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.7e-82 310.8 411 45.3
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 7.3e-81 305.4 449 41.9
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.8e-80 303.5 414 45.2
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 3.0e-79 300.1 401 43.1
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.5e-78 297.7 376 47.1
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.0e-78 297.4 215 65.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 9.8e-78 295.0 369 44.2
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.3e-77 294.7 197 69.0
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.4e-77 292.4 330 47.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.0e-75 287.3 416 40.6
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.7e-74 284.3 366 45.1
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.3e-74 283.9 442 37.3
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.9e-74 283.1 404 42.1
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.9e-74 283.1 462 39.2
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 6.6e-74 282.3 463 39.7
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.1e-73 281.6 366 44.3
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.9e-73 280.8 469 38.6
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 1.6e-72 277.7 201 66.7
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-70 271.6 384 42.2
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.3e-69 268.1 454 37.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.2e-69 267.3 348 45.7
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.8e-63 245.7 517 34.0
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-62 244.6 464 34.7
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.4e-62 243.0 411 38.2
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.5e-57 228.0 203 55.7
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.3e-57 225.7 406 36.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.6e-56 224.6 360 39.7
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.2e-54 218.4 162 63.6
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 4.4e-54 216.5 439 34.2
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.9e-53 213.0 412 34.0
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.6e-48 196.8 348 37.4
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-47 195.3 166 59.6
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.1e-47 195.3 166 59.6
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.6e-43 181.4 168 53.6
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 7.8e-43 179.1 169 53.8
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 7.3e-41 172.6 168 51.2
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.6e-38 164.1 109 65.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 7.6e-38 162.5 151 53.6
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.9e-37 160.6 458 29.0
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 8.4e-37 159.1 161 45.3
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.1e-35 154.5 240 42.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.1e-35 154.5 240 42.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.5e-35 153.7 366 31.4
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.8e-31 141.4 305 34.1
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.6e-30 137.5 321 34.9
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.8e-18 98.2 247 32.0
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.2e-14 85.5 98 41.8
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.5e-09 68.6 112 32.1
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.5e-09 67.8 120 35.8


User provided reference genes

Program Settings