Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 2188.7 1077 100.0
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1590.1 1066 72.6
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1503.8 1069 68.8
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1487.2 1069 68.8
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1486.9 1068 68.5
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1454.5 1060 66.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1435.6 1061 65.9
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1431.0 1061 66.1
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1428.3 1062 64.8
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1421.8 1064 64.8
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1417.9 1059 65.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1417.5 1055 65.5
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1410.6 1070 64.7
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1408.3 1084 64.9
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1402.1 1078 65.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1400.6 1064 64.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1397.5 1061 64.8
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1393.6 1062 63.7
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1392.9 1165 60.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1385.5 1062 63.7
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1382.9 1059 63.4
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1377.8 1042 64.6
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1376.7 1062 63.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1375.5 1074 62.8
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1059 65.5
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1360.5 1068 61.4
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1358.6 1065 62.6
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1350.9 1062 62.2
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1349.3 1064 61.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1346.3 1065 61.7
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1346.3 1072 62.0
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1346.3 1063 60.9
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1345.9 1065 62.4
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1340.9 1064 60.7
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1061 61.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1336.2 1073 61.9
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1333.5 1063 59.8
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1333.2 1068 61.8
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1332.4 1066 59.5
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1332.4 1067 60.8
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1331.6 1062 61.2
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1331.2 1076 61.5
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1330.5 1062 61.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1329.3 1111 59.7
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1329.3 1059 60.7
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1329.3 1028 63.8
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1065 61.2
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1325.8 1099 60.3
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1325.5 1066 60.5
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1325.1 1066 61.2
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1322.8 1068 60.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1322.8 1070 59.3
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1322.8 1062 61.4
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1322.0 1064 60.3
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1320.1 1062 59.6
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1318.1 1065 60.9
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1315.4 1057 61.5
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1315.4 1077 61.6
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1314.3 1065 59.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1310.8 1057 61.1
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1310.4 1061 60.7
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1310.0 1057 61.1
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1307.0 1057 61.0
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1299.6 1057 60.6
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1298.5 1057 60.5
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1296.6 1076 60.2
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1292.7 1065 60.2
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1290.0 1090 59.4
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1284.6 1063 58.8
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1278.8 1093 59.2
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1270.0 1091 58.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1268.8 1076 57.3
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1266.5 1098 58.7
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1261.1 1141 55.5
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1256.9 1064 58.1
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1253.8 1068 57.9
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1253.4 1068 57.9
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1251.5 1042 58.6
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1248.0 1067 59.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1237.6 1074 56.9
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1235.7 1061 57.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1234.2 1063 57.2
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1208.0 1056 57.6
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1207.6 1186 54.5
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1203.3 1058 57.5
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1199.9 1062 57.0
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1194.5 1079 56.1
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1182.5 1070 56.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1157.9 1154 52.1
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1154.4 880 64.2
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 0.0e+00 1134.0 887 62.7
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 7.1e-297 1024.2 1064 51.4
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 5.6e-294 1014.6 1035 50.1
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-276 956.8 934 54.1
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.5e-259 900.2 677 63.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 2.7e-256 889.4 936 51.2
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 2.2e-253 879.8 1077 44.3
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 8.5e-242 841.3 1074 41.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 8.3e-221 771.5 734 53.5
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.6e-216 756.1 705 54.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.4e-215 754.2 832 48.8
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.8e-210 736.1 705 52.6
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-208 730.7 738 52.7
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.7e-197 693.0 565 61.9
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.4e-197 692.2 520 64.6
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.4e-196 690.3 686 51.0
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.8e-192 676.8 1057 38.6
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.6e-190 670.2 866 41.5
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.2e-189 667.2 1076 36.4
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.9e-177 627.5 520 58.5
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.1e-175 620.2 870 37.7
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.8e-168 597.0 614 52.3
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 4.2e-164 583.2 489 60.7
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 7.6e-158 562.4 522 53.4
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 6.7e-154 549.3 477 58.9
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 4.0e-151 540.0 378 68.8
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 4.1e-127 460.3 456 49.8
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-121 442.2 351 61.5
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 7.7e-118 429.5 356 56.7
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.2e-117 427.9 869 31.0
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 6.3e-112 409.8 371 57.1
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.1e-92 345.9 1116 25.4
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.2e-75 287.0 245 58.8
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 7.5e-73 280.0 212 61.8
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.2e-67 262.7 959 26.3
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.7e-67 260.8 177 71.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.4e-63 248.4 398 39.4
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 3.2e-63 248.1 294 45.6
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 9.2e-63 246.5 221 53.4
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 6.0e-62 243.8 207 57.0
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-60 239.6 270 48.9
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 2.1e-59 235.3 245 49.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 3.6e-59 234.6 514 31.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.4e-55 222.6 1052 23.8
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.9e-53 214.5 324 41.0
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.9e-48 198.4 154 55.8
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.3e-44 184.9 216 48.1
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.3e-44 184.9 122 73.8
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 4.3e-36 157.9 327 32.1
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.6e-33 148.7 194 38.7
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.9e-32 145.2 113 66.4
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-28 133.3 103 56.3
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.5e-28 132.9 102 64.7
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 2.5e-28 132.1 95 67.4
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.5e-25 122.9 154 44.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.5e-23 115.5 71 69.0
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 7.4e-20 104.0 84 52.4
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 2.2e-19 102.4 97 56.7
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.7e-19 101.7 164 35.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 8.2e-19 100.5 70 62.9
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 8.2e-19 100.5 156 41.0
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 4.6e-14 84.7 70 58.6
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.4e-13 83.2 122 39.3
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 5.1e-13 81.3 104 41.3
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.0e-12 79.3 84 50.0
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.7e-08 66.2 56 57.1


User provided reference genes

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