Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 0.0e+00 1364.7 650 100.0
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1156.7 651 81.6
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 652 77.9
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 3.4e-310 1067.8 650 75.5
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 1.7e-309 1065.4 651 75.6
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 2.4e-308 1061.6 652 75.3
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 2.4e-308 1061.6 649 75.2
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 4.1e-308 1060.8 643 75.9
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 1.2e-307 1059.3 652 74.2
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 2.0e-307 1058.5 652 75.0
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 2.0e-307 1058.5 646 76.3
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 7.8e-307 1056.6 650 74.9
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 1.0e-306 1056.2 650 74.3
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 1.0e-306 1056.2 645 74.6
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.7e-306 1055.4 646 75.4
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 2.9e-306 1054.7 652 74.1
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 6.6e-306 1053.5 652 74.1
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 1.5e-305 1052.4 645 74.3
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 1.5e-305 1052.4 652 74.1
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 7.3e-305 1050.0 658 73.3
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 652 74.7
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 1.2e-304 1049.3 639 74.6
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 1.6e-304 1048.9 645 74.4
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 2.8e-304 1048.1 652 73.9
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 8.0e-304 1046.6 641 75.2
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 2.3e-303 1045.0 650 73.8
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 3.0e-303 1044.6 646 74.6
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 3.0e-303 1044.6 669 72.3
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 3.0e-303 1044.6 692 71.2
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 4.0e-303 1044.3 652 73.0
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 6.8e-303 1043.5 652 74.1
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 8.9e-303 1043.1 650 73.7
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 3.4e-302 1041.2 652 71.9
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 3.7e-301 1037.7 645 74.4
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 6.4e-301 1036.9 656 73.3
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 1.1e-300 1036.2 638 74.9
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 1.4e-300 1035.8 639 75.0
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 1.4e-300 1035.8 655 73.4
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 2.4e-300 1035.0 652 73.5
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 3.2e-300 1034.6 652 73.2
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 9.2e-300 1033.1 652 71.9
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 652 73.5
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 1.6e-299 1032.3 647 73.6
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 2.0e-299 1031.9 640 74.2
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 2.5e-297 1025.0 652 71.9
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 4.3e-297 1024.2 652 71.8
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 9.5e-297 1023.1 646 74.6
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 1.6e-296 1022.3 651 70.5
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 2.8e-296 1021.5 646 72.0
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 2.8e-296 1021.5 653 71.2
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 3.6e-296 1021.1 642 73.5
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 4.7e-296 1020.8 631 75.0
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 2.3e-295 1018.5 641 71.8
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 5.2e-295 1017.3 647 72.0
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 6.8e-295 1016.9 649 70.9
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 649 72.3
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.4e-294 1014.2 652 71.9
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 7.5e-294 1013.4 651 70.5
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 2.2e-293 1011.9 681 69.0
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 1.1e-292 1009.6 724 66.4
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 7.0e-292 1006.9 653 72.0
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 1.2e-291 1006.1 645 70.4
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 6.0e-291 1003.8 642 71.2
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 3.0e-290 1001.5 651 71.3
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 6.6e-290 1000.3 614 74.6
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 6.6e-290 1000.3 669 68.3
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 6.2e-288 993.8 614 74.8
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 4.0e-287 991.1 648 69.9
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 5.2e-287 990.7 650 70.8
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 6.8e-287 990.3 656 69.5
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 1.7e-285 985.7 651 68.8
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.1e-284 983.0 651 69.0
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 1.9e-284 982.2 653 68.6
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 4.1e-284 981.1 806 60.3
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 9.2e-284 979.9 645 69.1
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 9.2e-284 979.9 594 74.9
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.6e-283 979.2 645 69.0
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 2.7e-283 978.4 650 69.1
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 7.8e-283 976.9 650 68.3
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 5.1e-282 974.2 644 68.9
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 5.1e-282 974.2 644 68.9
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 5.1e-282 974.2 644 68.9
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 2.8e-280 968.4 598 74.9
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 9.9e-278 959.9 637 68.4
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 1.1e-276 956.4 645 67.3
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 9.2e-276 953.4 794 58.6
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 8.7e-274 946.8 594 72.1
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 1.7e-269 932.6 597 72.5
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.7e-267 925.2 652 67.3
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 1.0e-258 896.7 575 71.7
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 2.0e-254 882.5 638 64.3
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.7e-253 879.4 642 66.4
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.6e-248 862.8 558 69.7
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 4.5e-246 854.7 636 62.4
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 1.6e-243 846.3 558 68.8
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 2.7e-243 845.5 639 61.8
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 4.4e-193 678.7 514 62.8
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 6.8e-178 628.2 364 75.5
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 1.4e-162 577.4 370 71.9
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 6.2e-155 552.0 381 67.5
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.3e-152 544.3 558 51.3
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.1e-146 524.6 373 64.1
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 8.7e-141 505.0 533 49.2
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.3e-116 423.3 241 78.0
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 3.0e-85 320.5 738 31.8
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 3.2e-74 283.9 152 82.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 4.4e-68 263.5 244 54.1
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 2.7e-49 201.1 200 51.5
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 4.5e-28 130.6 90 73.3
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 9.9e-28 129.4 72 86.1
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 3.9e-24 117.5 77 66.2
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 5.1e-24 117.1 70 70.0
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 1.6e-22 112.1 94 60.6
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 6.2e-22 110.2 71 64.8
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.2e-20 105.9 70 64.3
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 2.6e-20 104.8 72 70.8
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 2.6e-20 104.8 72 70.8
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 2.6e-20 104.8 72 70.8
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 2.7e-17 94.7 110 42.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 6.0e-17 93.6 64 62.5
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 1.3e-16 92.4 82 54.9
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.2e-10 70.9 41 70.7
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 8.7e-08 63.2 69 36.2
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 5.7e-07 60.5 64 37.5
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 3.7e-06 57.8 99 36.4


User provided reference genes

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