Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1686.0 842 100.0
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1474.9 852 87.1
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1473.0 836 87.2
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1457.2 822 87.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1454.1 841 85.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1453.3 822 87.8
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1417.9 845 84.3
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1401.7 823 85.2
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1389.8 830 83.5
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 841 82.0
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1377.5 825 83.0
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1374.8 830 82.7
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 836 82.7
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 814 83.3
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 827 83.2
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1369.4 827 82.6
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1369.0 817 83.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 823 82.4
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1363.6 807 84.5
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 825 82.9
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1358.6 833 82.2
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 827 82.7
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 832 82.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 823 83.0
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1357.4 832 82.2
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 831 81.7
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1355.9 834 81.7
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 828 82.2
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1354.3 831 81.3
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 837 81.6
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 844 81.2
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 835 81.1
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 830 81.4
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 844 80.8
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1343.2 827 81.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 844 80.8
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 839 80.6
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 844 80.5
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1338.9 828 81.5
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 835 81.8
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 842 80.2
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 827 80.9
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 834 80.0
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 819 81.7
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1333.2 822 81.4
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1332.8 862 78.9
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 825 80.7
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 844 80.1
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 818 81.1
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 825 80.0
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 836 79.9
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 836 80.3
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 826 81.1
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1325.1 875 77.9
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1324.7 828 79.3
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 828 80.4
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 827 79.3
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 827 80.4
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 826 80.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 809 81.0
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 842 79.1
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 829 80.9
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 828 80.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 819 81.2
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 797 82.2
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 836 79.8
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 828 80.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 822 81.1
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1309.3 818 80.0
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 833 79.7
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1306.2 838 78.9
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 857 73.6
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 828 78.6
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 832 78.8
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 822 79.4
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 815 80.0
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 819 79.6
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1297.7 828 80.0
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 828 79.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1294.3 831 78.7
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1293.5 838 79.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 831 77.7
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 829 78.4
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 811 80.5
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 812 79.3
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 821 78.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 827 78.4
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 863 76.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 827 79.0
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 821 78.7
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 814 79.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 866 75.3
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 810 78.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 828 78.9
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 838 78.5
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 813 79.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 805 78.8
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 826 78.3
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 826 78.3
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1272.7 826 78.3
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 836 77.2
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 830 77.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 830 77.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 830 77.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 830 77.5
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 816 79.2
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1268.8 834 77.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 839 76.4
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 820 77.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 841 77.5
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 816 78.2
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 856 76.1
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 841 77.4
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1261.1 827 76.9
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 818 77.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 821 77.5
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 763 82.7
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 815 75.2
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 861 73.3
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 815 78.3
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 814 77.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1227.6 816 77.1
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1226.1 821 75.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1224.2 827 75.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 838 75.5
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1217.6 767 80.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1216.8 825 71.0
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 811 76.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1211.8 882 72.3
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1210.3 828 74.9
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1198.0 832 73.7
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1196.0 820 74.6
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1187.6 700 84.7
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1186.4 828 74.6
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1182.9 757 78.7
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1175.6 811 73.1
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1170.2 819 75.0
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1167.9 888 69.0
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1162.9 817 72.0
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1132.9 764 74.5
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1126.3 735 79.2
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 1.5e-302 1042.7 825 67.9
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-302 1042.0 846 66.9
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.3e-285 986.5 571 82.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.6e-283 979.5 633 73.0
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 8.1e-264 914.1 519 84.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.1e-260 903.7 597 74.0
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.9e-258 895.2 541 84.3
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.0e-197 692.2 708 55.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 1.9e-151 540.8 460 58.7
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.3e-141 507.3 331 74.6
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.6e-137 493.8 362 75.4
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 2.9e-104 384.0 316 69.3
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 6.5e-104 382.9 580 48.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.3e-101 374.4 397 54.9
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 5.7e-100 369.8 263 68.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.4e-61 242.3 156 78.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 9.8e-52 209.5 140 71.4
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 9.5e-47 193.0 165 59.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 1.4e-37 162.5 679 26.1
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.6e-33 147.5 130 57.7
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.0e-32 144.1 462 27.5
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.6e-30 137.9 76 85.5
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.2e-29 134.0 474 25.9
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 6.4e-27 127.1 68 89.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 4.1e-26 124.4 428 28.0
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.2e-25 122.9 471 27.0
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-25 122.5 96 66.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.9e-23 115.5 69 75.4
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-16 92.0 216 32.4
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-16 90.5 266 27.8
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.6e-14 85.9 153 35.9
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.3e-11 76.3 86 40.7
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-08 65.5 88 39.8
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.5e-07 62.0 38 78.9


User provided reference genes

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