Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 3.8e-179 631.3 308 100.0
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 3.3e-130 468.8 501 52.3
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 3.6e-129 465.3 501 52.1
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 4.7e-129 464.9 501 51.3
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 6.2e-129 464.5 501 52.1
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.1e-128 463.8 501 50.7
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.1e-128 462.2 501 50.1
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 9.9e-127 457.2 481 52.2
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 4.9e-126 454.9 501 50.1
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 1.4e-125 453.4 501 50.7
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.9e-125 453.0 499 50.1
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 2.4e-125 452.6 501 50.1
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 4.1e-125 451.8 501 50.5
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 4.1e-125 451.8 501 50.5
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 5.4e-125 451.4 501 50.1
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 5.4e-125 451.4 501 49.7
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 7.1e-125 451.1 501 50.1
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 1.2e-124 450.3 501 49.7
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.2e-124 450.3 502 49.4
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 2.1e-124 449.5 501 49.5
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 4.6e-124 448.4 501 49.7
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 7.8e-124 447.6 499 49.7
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.0e-123 447.2 501 49.7
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.3e-123 446.8 502 50.0
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 3.9e-123 445.3 501 50.1
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 5.1e-123 444.9 501 50.1
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 6.6e-123 444.5 501 49.3
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.1e-122 443.7 501 49.5
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.5e-122 443.4 501 49.3
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.9e-122 443.0 501 49.3
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.9e-122 443.0 502 49.4
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 2.5e-122 442.6 504 50.8
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 2.5e-122 442.6 501 49.1
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 3.3e-122 442.2 502 49.2
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 4.3e-122 441.8 502 49.8
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 5.6e-122 441.4 499 49.1
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 5.6e-122 441.4 503 49.5
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 5.6e-122 441.4 502 49.2
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 9.5e-122 440.7 501 49.3
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.6e-121 439.9 501 48.9
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.6e-121 439.9 501 48.5
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 1.6e-121 439.9 499 49.5
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 2.8e-121 439.1 501 50.1
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 4.7e-121 438.3 501 49.3
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 1.1e-120 437.2 501 49.5
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.4e-120 436.8 502 49.4
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 4.0e-120 435.3 502 49.0
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 1.2e-119 433.7 501 49.5
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 2.0e-119 433.0 461 50.8
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 4.4e-119 431.8 501 48.1
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 5.8e-119 431.4 502 48.6
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 5.8e-119 431.4 502 48.8
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 5.8e-119 431.4 501 48.5
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 7.6e-119 431.0 502 48.2
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 7.6e-119 431.0 502 48.6
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.3e-118 430.3 501 47.9
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 1.7e-118 429.9 502 48.6
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 2.9e-118 429.1 519 48.7
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 2.9e-118 429.1 513 49.1
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 8.4e-118 427.6 502 47.8
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 1.1e-117 427.2 498 47.4
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 1.1e-117 427.2 501 47.9
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 1.9e-117 426.4 493 48.1
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 2.4e-117 426.0 501 48.3
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 3.2e-117 425.6 497 49.1
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 4.1e-117 425.2 502 48.2
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 4.1e-117 425.2 502 48.0
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 5.4e-117 424.9 503 47.9
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 5.4e-117 424.9 501 48.1
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 7.1e-117 424.5 505 47.9
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 7.1e-117 424.5 502 48.4
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 9.2e-117 424.1 488 48.8
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 9.2e-117 424.1 502 48.0
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 9.2e-117 424.1 479 49.7
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 1.6e-116 423.3 502 47.2
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.6e-116 423.3 502 47.6
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 1.6e-116 423.3 500 47.2
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 2.1e-116 422.9 502 48.2
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 2.1e-116 422.9 501 47.3
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 2.1e-116 422.9 499 47.5
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 2.7e-116 422.5 501 48.1
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 3.5e-116 422.2 500 47.4
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 4.6e-116 421.8 502 47.0
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 6.0e-116 421.4 502 47.6
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 6.0e-116 421.4 498 45.8
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 6.0e-116 421.4 502 48.0
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 1.0e-115 420.6 492 47.8
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 1.3e-115 420.2 539 45.8
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 1.3e-115 420.2 501 47.9
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 1.7e-115 419.9 501 46.5
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 3.0e-115 419.1 501 46.9
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 3.9e-115 418.7 488 49.6
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 6.6e-115 417.9 502 47.2
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 6.6e-115 417.9 501 46.9
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 6.6e-115 417.9 502 48.2
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 8.7e-115 417.5 501 47.9
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.5e-114 416.8 555 44.5
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 2.5e-114 416.0 498 47.4
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 9.6e-114 414.1 502 47.8
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 9.6e-114 414.1 502 47.4
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 2.1e-113 412.9 477 48.0
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 4.7e-113 411.8 501 46.7
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 1.1e-112 410.6 497 45.9
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 5.2e-112 408.3 502 46.2
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 9.0e-112 407.5 502 46.4
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 9.0e-112 407.5 537 44.7
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 1.2e-111 407.1 491 46.8
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 1.5e-111 406.8 501 46.5
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 1.5e-111 406.8 501 46.3
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 3.4e-111 405.6 501 46.3
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 3.4e-111 405.6 501 46.3
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 3.4e-111 405.6 501 46.3
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 4.4e-111 405.2 501 46.5
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 5.8e-111 404.8 555 43.8
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 1.3e-110 403.7 501 45.9
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 3.8e-110 402.1 501 45.9
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 6.4e-110 401.4 518 45.4
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 6.4e-110 401.4 501 45.1
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 8.4e-110 401.0 518 45.9
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 2.4e-109 399.4 502 46.2
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 4.2e-109 398.7 501 45.3
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 5.4e-109 398.3 502 45.6
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 9.3e-109 397.5 498 45.4
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 1.2e-108 397.1 501 45.7
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 1.7e-107 393.3 502 45.2
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 3.0e-107 392.5 497 44.5
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 1.9e-106 389.8 502 44.6
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 1.3e-105 387.1 604 40.1
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 4.0e-104 382.1 521 43.2
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 9.9e-103 377.5 500 42.8
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 3.0e-99 365.9 518 43.1
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 3.3e-98 362.5 489 44.2
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 6.9e-96 354.8 501 42.5
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 6.0e-84 315.1 413 45.0
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 6.0e-84 315.1 494 38.3
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 1.8e-83 313.5 410 45.1
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 2.3e-83 313.2 414 43.7
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 5.9e-79 298.5 525 37.7
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 3.2e-77 292.7 499 35.7
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 5.5e-77 292.0 177 76.3
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 1.2e-76 290.8 503 36.0
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 4.6e-76 288.9 502 35.1
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 7.9e-76 288.1 181 70.7
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 3.9e-75 285.8 497 35.8
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 1.5e-74 283.9 502 35.9
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 5.1e-67 258.8 395 40.0
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 1.9e-61 240.4 545 31.2
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 5.2e-59 232.3 134 82.1
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 1.3e-54 217.6 492 30.3
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 8.5e-54 214.9 134 76.9
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 2.5e-53 213.4 316 41.5
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 2.5e-53 213.4 485 30.9
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 4.2e-53 212.6 134 75.4
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 1.6e-52 210.7 126 77.8
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 1.0e-51 208.0 500 29.8
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 2.6e-50 203.4 117 81.2
Cc03_g00630 Coffea canephora HOM05D003564 ORTHO05D028498 7.7e-47 191.8 107 84.1
Aqoxy2G02665 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 1.5e-45 187.6 136 71.3
MD09G1275000 Malus domestica HOM05D003564 ORTHO05D024794 9.4e-45 184.9 124 71.0
TAR365G0172 Trochodendron aralioides HOM05D003564 ORTHO05D028498 1.0e-43 181.4 138 67.4
Glyma.08G358832 Glycine max HOM05D003564 ORTHO05D028498 4.4e-42 176.0 107 77.6
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 2.7e-39 166.8 100 80.0
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.5e-39 166.4 342 35.4
CAN.G311.68 Capsicum annuum HOM05D003564 ORTHO05D024794 6.8e-35 152.1 167 50.3
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 1.7e-30 137.5 107 64.5
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 5.2e-27 125.9 138 52.2
RcHm_v2.0_Chr2g0091411 Rosa chinensis HOM05D003564 ORTHO05D024794 2.1e-20 104.0 79 62.0
CAN.G170.129 Capsicum annuum HOM05D000030 ORTHO05D000031 8.0e-20 102.1 63 74.6
Hma1.2p1_2775F.1_g328275 Hydrangea macrophylla HOM05D003564 ORTHO05D228278 9.8e-18 95.1 52 75.0
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 2.2e-17 94.0 146 37.7
RcHm_v2.0_Chr4g0385481 Rosa chinensis HOM05D003564 ORTHO05D024794 4.9e-17 92.8 58 72.4
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 8.3e-17 92.0 135 36.3
DCAR_010722 Daucus carota HOM05D003564 ORTHO05D005332 1.5e-13 81.3 116 44.8
arahy.Tifrunner.gnm1.ann1.8E1ZVU Arachis hypogaea HOM05D000338 ORTHO05D001259 1.8e-11 74.3 49 67.3
Lsat_1_v5_gn_8_109520 Lactuca sativa HOM05D003564 ORTHO05D232393 2.9e-09 67.0 66 48.5
Sc06g0010690 Simmondsia chinensis HOM05D003564 ORTHO05D389581 5.4e-08 62.8 43 65.1
Sc16g0004630 Simmondsia chinensis HOM05D022636 ORTHO05D389257 3.9e-06 56.6 54 51.9
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 5.1e-06 56.2 138 30.4
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 5.1e-06 56.2 99 37.4
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 5.1e-06 56.2 99 37.4
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 5.1e-06 56.2 99 37.4
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 8.6e-06 55.5 133 30.1
ECA246G1707 Erigeron canadensis HOM05D002718 ORTHO05D003269 8.6e-06 55.5 166 28.9


User provided reference genes

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