Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy2G03320 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 6.0e-46 187.2 97 100.0
Aqoxy6G00952 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 6.0e-46 187.2 97 100.0
Aqoxy6G00950 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 3.4e-33 144.8 76 100.0
TAR381G1599 Trochodendron aralioides HOM05D008210 ORTHO05D010078 4.3e-20 101.3 95 55.8
Haze_17600 Corylus avellana HOM05D008210 ORTHO05D010078 2.4e-18 95.5 82 53.7
Cfa018466 Carpinus fangiana HOM05D008210 ORTHO05D010078 4.0e-18 94.7 86 53.5
Rhsim06G0039800 Rhododendron simsii HOM05D008210 ORTHO05D010078 2.6e-17 92.0 102 46.1
Nn5g29422 Nelumbo nucifera HOM05D008210 ORTHO05D010078 5.8e-17 90.9 96 55.2
Hma1.2p1_0023F.1_g015200 Hydrangea macrophylla HOM05D008210 ORTHO05D010078 1.9e-15 85.9 90 48.9
QL02p006968 Quercus lobata HOM05D008210 ORTHO05D010078 1.9e-15 85.9 79 51.9
Ciclev10002912m.g Citrus clementina HOM05D008210 ORTHO05D010078 7.9e-14 80.5 95 41.1
Atru.chr13.581 Acer truncatum HOM05D008210 ORTHO05D010078 1.8e-13 79.3 88 50.0
Sabra14G0027900 Salix brachista HOM05D008210 ORTHO05D010078 2.3e-13 79.0 92 47.8
SGA_v2.0_scaffold14G07009 Striga asiatica HOM05D008210 ORTHO05D010078 5.1e-13 77.8 109 45.9
Gorai.010G013900 Gossypium raimondii HOM05D008210 ORTHO05D010078 8.7e-13 77.0 95 45.3
Thecc.08G019400 Theobroma cacao HOM05D008210 ORTHO05D010078 8.7e-13 77.0 73 47.9
TAR628G0004 Trochodendron aralioides HOM05D008210 ORTHO05D010078 8.7e-13 77.0 82 54.9
FAN15G3542 Fragaria x ananassa HOM05D008210 ORTHO05D010078 3.3e-12 75.1 87 47.1
RcHm_v2.0_Chr6g0300191 Rosa chinensis HOM05D008210 ORTHO05D010078 3.3e-12 75.1 78 50.0
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 4.3e-12 74.7 89 49.4
FvH4_2g40530 Fragaria vesca HOM05D008210 ORTHO05D010078 4.3e-12 74.7 81 49.4
Atru.chr13.582 Acer truncatum HOM05D008210 ORTHO05D010078 1.3e-11 73.2 88 45.5
Gohir.A06G013600 Gossypium hirsutum HOM05D008210 ORTHO05D010078 1.3e-11 73.2 95 43.2
Lsat_1_v5_gn_1_19601 Lactuca sativa HOM05D008210 ORTHO05D010078 1.3e-11 73.2 80 46.2
Potri.014G038500 Populus trichocarpa HOM05D008210 ORTHO05D010078 1.3e-11 73.2 89 44.9
Prupe.1G386500 Prunus persica HOM05D008210 ORTHO05D010078 2.2e-11 72.4 72 51.4
Manes.05G166500 Manihot esculenta HOM05D008210 ORTHO05D010078 3.7e-11 71.6 97 42.3
TPR.G12346 Trifolium pratense HOM05D008210 ORTHO05D010078 4.8e-11 71.2 78 44.9
Dinv36022 Davidia involucrata HOM05D000260 ORTHO05D002276 8.2e-11 70.5 58 56.9
Gohir.D06G011200 Gossypium hirsutum HOM05D008210 ORTHO05D010078 8.2e-11 70.5 96 42.7
Nn7g37755 Nelumbo nucifera HOM05D008210 ORTHO05D010078 8.2e-11 70.5 68 55.9
Potri.002G130500 Populus trichocarpa HOM05D008210 ORTHO05D010078 1.4e-10 69.7 85 45.9
Cpa.g.sc64.23 Carica papaya HOM05D008210 ORTHO05D010078 1.8e-10 69.3 97 45.4
COL.COLO4_26398 Corchorus olitorius HOM05D008210 ORTHO05D010078 2.4e-10 68.9 74 45.9
CiPaw.15G068700 Carya illinoinensis HOM05D008210 ORTHO05D010078 3.1e-10 68.6 90 37.8
Nn6g32154 Nelumbo nucifera HOM05D008210 ORTHO05D010078 3.1e-10 68.6 67 58.2
Ah.09g236870 Amaranthus hybridus HOM05D008210 ORTHO05D010078 5.3e-10 67.8 88 42.0
Ah.09g236890 Amaranthus hybridus HOM05D008210 ORTHO05D010078 5.3e-10 67.8 88 42.0
Nitab4.5_0000110g0010 Nicotiana tabacum HOM05D008210 ORTHO05D010078 5.3e-10 67.8 73 49.3
Nn4g22836 Nelumbo nucifera HOM05D008210 ORTHO05D010078 1.2e-09 66.6 61 52.5
EL10Ac8g19959 Beta vulgaris HOM05D008210 ORTHO05D010078 1.5e-09 66.2 96 37.5
MBI16_g31333_MAGBIO Magnolia biondii HOM05D008210 ORTHO05D010078 2.0e-09 65.9 104 41.3
Medtr3g111460 Medicago truncatula HOM05D008210 ORTHO05D010078 3.4e-09 65.1 79 41.8
GSVIVG01009614001 Vitis vinifera HOM05D008210 ORTHO05D010078 4.5e-09 64.7 67 47.8
Eucgr.F01503 Eucalyptus grandis HOM05D008210 ORTHO05D010078 7.6e-09 63.9 101 37.6
arahy.Tifrunner.gnm1.ann1.KBQ6U1 Arachis hypogaea HOM05D008210 ORTHO05D010078 1.0e-08 63.5 83 43.4
MSTRG.22279 Avicennia marina HOM05D008210 ORTHO05D010078 1.7e-08 62.8 82 45.1
Ca_15536_v3 Cicer arietinum L. HOM05D008210 ORTHO05D010078 1.7e-08 62.8 82 39.0
Phvul.009G061375 Phaseolus vulgaris HOM05D008210 ORTHO05D010078 1.7e-08 62.8 99 40.4
CARHR037250 Cardamine hirsuta HOM05D015684 ORTHO05D010078 2.2e-08 62.4 74 43.2
VMungo1309G3066 Vigna mungo HOM05D008210 ORTHO05D010078 3.8e-08 61.6 93 37.6
Migut.N02682 Erythranthe guttata HOM05D008210 ORTHO05D010078 6.5e-08 60.8 48 58.3
SalBow8G0954 Salvia bowleyana HOM05D008210 ORTHO05D010078 8.5e-08 60.5 95 38.9
AL1G53960 Arabidopsis lyrata HOM05D015684 ORTHO05D010078 1.1e-07 60.1 71 40.8
ECA247G0280 Erigeron canadensis HOM05D008210 ORTHO05D010078 1.4e-07 59.7 94 39.4
Carub.0001s3639 Capsella rubella HOM05D015684 ORTHO05D010078 1.9e-07 59.3 75 42.7
Glyma.04G035200 Glycine max HOM05D008210 ORTHO05D010078 3.2e-07 58.5 69 44.9
Nn3g21814 Nelumbo nucifera HOM05D008210 ORTHO05D010078 3.2e-07 58.5 96 42.7
Cc10_g03600 Coffea canephora HOM05D008210 ORTHO05D010078 4.2e-07 58.2 102 36.3
CiPaw.01G028200 Carya illinoinensis HOM05D008334 ORTHO05D010366 7.2e-07 57.4 106 40.6
Manes.12G094900 Manihot esculenta HOM05D008334 ORTHO05D010366 7.2e-07 57.4 101 40.6
Psat0s3268g0120 Pisum sativum HOM05D008210 ORTHO05D010078 7.2e-07 57.4 91 35.2
QL06p044185 Quercus lobata HOM05D008334 ORTHO05D010366 1.2e-06 56.6 101 39.6
MELO3C010908.2 Cucumis melo HOM05D022138 ORTHO05D010078 1.6e-06 56.2 70 40.0
Potri.007G034700 Populus trichocarpa HOM05D008334 ORTHO05D010366 1.6e-06 56.2 104 37.5
RcHm_v2.0_Chr2g0103311 Rosa chinensis HOM05D008334 ORTHO05D010366 1.6e-06 56.2 112 38.4
Cfa004229 Carpinus fangiana HOM05D008334 ORTHO05D010366 2.1e-06 55.8 104 37.5
Migut.H00500 Erythranthe guttata HOM05D008334 ORTHO05D010366 2.1e-06 55.8 109 37.6
Lj1g0017592 Lotus japonicus HOM05D008210 ORTHO05D010078 2.1e-06 55.8 77 39.0
Sc02g0006720 Simmondsia chinensis HOM05D008210 ORTHO05D010078 2.1e-06 55.8 71 42.3
A08p05560 Brassica napus HOM05D015684 ORTHO05D010078 2.7e-06 55.5 71 40.8
C08p06120 Brassica napus HOM05D015684 ORTHO05D010078 3.6e-06 55.1 70 40.0
BolC8t47395H Brassica oleracea HOM05D015684 ORTHO05D010078 3.6e-06 55.1 70 40.0
ClCG08G015480 Citrullus lanatus HOM05D022138 ORTHO05D010078 3.6e-06 55.1 70 41.4
Manes.13G131800 Manihot esculenta HOM05D008334 ORTHO05D010366 3.6e-06 55.1 105 38.1
FAN19G2894 Fragaria x ananassa HOM05D008334 ORTHO05D010366 4.6e-06 54.7 113 38.1
Prupe.7G144800 Prunus persica HOM05D008334 ORTHO05D010366 6.1e-06 54.3 108 41.7
Nitab4.5_0001014g0160 Nicotiana tabacum HOM05D008334 ORTHO05D010366 7.9e-06 53.9 108 39.8


User provided reference genes

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