Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 0.0e+00 1139.8 566 100.0
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 2.5e-224 782.3 567 68.4
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 2.7e-223 778.9 567 68.4
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 5.7e-221 771.2 577 66.2
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.0e-217 760.4 576 65.6
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 5.0e-217 758.1 576 65.8
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.1e-216 756.9 575 64.3
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.4e-216 756.5 577 66.0
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.1e-215 751.1 577 64.3
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 7.9e-215 750.7 576 65.3
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.8e-214 749.6 577 64.1
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.3e-214 749.2 577 64.5
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.9e-214 748.4 575 63.8
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 5.1e-214 748.0 575 64.2
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 6.7e-214 747.7 575 64.9
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 1.5e-213 746.5 575 63.8
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 3.3e-213 745.3 575 64.9
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 4.3e-213 745.0 577 65.2
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 9.7e-213 743.8 575 63.5
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 1.3e-212 743.4 577 63.8
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.7e-212 743.0 577 63.6
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.1e-211 740.3 578 63.7
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 2.4e-211 739.2 576 63.5
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 2.6e-210 735.7 575 64.0
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 7.7e-210 734.2 573 63.5
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 6.5e-209 731.1 576 64.1
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.9e-208 729.6 571 65.0
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 1.9e-208 729.6 575 64.9
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 2.1e-207 726.1 577 63.6
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 4.7e-207 724.9 574 62.9
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 6.1e-207 724.5 576 62.5
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 7.9e-207 724.2 576 63.4
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.1e-205 720.3 578 62.8
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.0e-205 719.5 568 62.7
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 4.4e-205 718.4 587 62.9
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 5.7e-205 718.0 571 63.2
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 7.4e-205 717.6 577 62.6
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 9.7e-205 717.2 576 61.5
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.1e-203 712.2 573 61.4
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 7.0e-203 711.1 575 60.9
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 5.9e-202 708.0 570 61.8
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.8e-201 705.3 573 61.3
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 3.2e-200 702.2 573 60.9
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 5.5e-200 701.4 605 59.8
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.2e-199 700.3 594 60.4
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 2.1e-199 699.5 575 61.7
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 2.1e-199 699.5 573 61.6
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 4.7e-199 698.4 574 60.6
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 8.8e-198 694.1 576 61.5
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 2.0e-197 693.0 571 60.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 2.0e-197 693.0 573 60.7
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 5.7e-197 691.4 573 60.7
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 1.3e-196 690.3 570 60.5
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 3.7e-196 688.7 577 60.3
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 3.1e-195 685.6 573 58.5
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 1.2e-194 683.7 574 60.6
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 5.9e-194 681.4 604 57.6
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 5.9e-194 681.4 566 59.5
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.0e-193 680.6 570 60.0
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 8.5e-193 677.6 568 60.2
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 4.2e-192 675.2 575 59.7
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 1.2e-191 673.7 571 59.9
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 6.1e-191 671.4 569 60.1
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.8e-190 669.8 568 59.7
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 2.3e-190 669.5 567 59.8
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.2e-189 667.2 568 59.3
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 2.0e-189 666.4 568 59.3
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 4.1e-187 658.7 572 58.6
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 2.0e-186 656.4 575 58.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 2.7e-186 656.0 567 59.3
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.0e-185 654.1 545 60.6
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 1.3e-185 653.7 573 57.1
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.5e-184 650.2 568 58.8
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 1.9e-184 649.8 552 60.0
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 2.5e-184 649.4 575 57.6
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 6.1e-183 644.8 575 57.9
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.0e-182 644.0 509 62.7
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.0e-182 644.0 604 56.1
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.9e-176 623.2 569 55.9
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 5.2e-174 615.1 495 61.8
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 6.4e-172 608.2 645 50.5
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 2.7e-170 602.8 567 54.9
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 2.7e-170 602.8 567 54.9
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 2.7e-170 602.8 528 59.3
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 1.0e-169 600.9 517 58.6
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 8.6e-169 597.8 503 60.2
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.3e-168 595.9 430 69.5
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 7.3e-168 594.7 567 54.3
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 7.3e-168 594.7 567 54.3
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 2.1e-167 593.2 567 54.3
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.0e-161 574.3 478 61.3
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 1.1e-160 570.9 421 68.2
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 6.2e-159 565.1 432 63.9
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 2.6e-157 559.7 552 50.7
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 7.5e-157 558.1 541 54.0
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 7.5e-157 558.1 681 46.4
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 2.1e-146 523.5 488 57.4
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 6.2e-143 511.9 578 49.3
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 8.9e-142 508.1 392 63.3
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.5e-141 507.3 473 57.9
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.1e-138 496.9 390 62.1
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.4e-133 479.2 456 55.0
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.1e-127 458.4 363 64.2
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.8e-121 440.7 604 40.4
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 1.7e-116 424.1 602 41.4
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 6.0e-114 415.6 357 59.1
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 4.2e-107 392.9 555 41.6
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 6.7e-105 385.6 469 48.0
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.1e-102 378.3 288 65.3
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 2.6e-64 250.8 245 50.6
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 3.8e-60 236.9 376 39.6
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 3.6e-58 230.3 274 48.2
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 3.4e-56 223.8 208 55.8
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 3.3e-51 207.2 160 64.4
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 4.7e-50 203.4 517 29.8
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 3.4e-32 144.1 135 57.8
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 7.6e-32 142.9 100 65.0
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 1.3e-31 142.1 152 48.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 4.6e-29 133.7 488 24.8
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 6.0e-29 133.3 613 24.8
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 1.0e-28 132.5 121 53.7
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 3.9e-28 130.6 215 38.6
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 8.1e-26 122.9 371 26.4
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.1e-25 122.5 74 73.0
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.3e-23 115.5 115 50.4
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.3e-23 115.5 115 50.4
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 8.4e-23 112.8 120 47.5
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.7e-21 107.8 73 72.6
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.4e-17 95.5 89 51.7
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 8.4e-15 86.3 78 53.8
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-13 81.3 68 54.4
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 7.9e-13 79.7 78 52.6
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 1.0e-12 79.3 263 29.7
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 3.3e-11 74.3 52 63.5
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 9.9e-08 62.8 45 62.2
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 9.9e-08 62.8 51 54.9
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 1.7e-07 62.0 70 48.6


User provided reference genes

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