Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.3e-94 349.7 175 100.0
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-75 287.0 171 83.0
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.9e-74 282.7 170 81.8
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 4.2e-74 281.6 171 82.5
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.8e-72 276.2 170 78.8
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.3e-72 275.8 175 78.9
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.3e-72 275.8 171 80.7
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.0e-72 275.4 171 80.7
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.9e-72 275.0 170 77.6
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 6.7e-72 274.2 167 80.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 6.7e-72 274.2 170 77.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 8.8e-72 273.9 170 75.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 8.8e-72 273.9 168 79.8
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-71 273.5 170 77.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.1e-71 273.5 170 76.5
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-71 273.5 170 77.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.5e-71 273.1 160 82.5
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.6e-71 272.3 170 77.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 2.6e-71 272.3 175 77.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.4e-71 271.6 171 79.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.4e-71 271.6 171 79.5
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 7.4e-71 270.8 170 75.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.7e-71 270.4 170 74.7
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 9.7e-71 270.4 170 76.5
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-70 270.0 170 76.5
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-70 270.0 170 75.3
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-70 270.0 168 77.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.3e-70 270.0 171 78.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.7e-70 269.6 170 76.5
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.7e-70 269.6 170 77.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.7e-70 269.6 170 75.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 2.2e-70 269.2 170 75.9
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 2.2e-70 269.2 170 76.5
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 2.8e-70 268.9 170 74.7
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.8e-70 268.9 170 77.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.7e-70 268.5 169 80.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 3.7e-70 268.5 171 76.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 4.8e-70 268.1 175 76.0
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.8e-70 268.1 170 76.5
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-70 268.1 170 76.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 6.3e-70 267.7 167 76.6
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.8e-69 266.2 170 74.1
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 2.4e-69 265.8 172 75.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.1e-69 265.4 155 84.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 4.1e-69 265.0 170 74.1
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.3e-69 264.6 170 75.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 5.3e-69 264.6 170 77.1
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 5.3e-69 264.6 172 74.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 7.0e-69 264.2 172 76.2
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.5e-68 261.5 168 76.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 4.5e-68 261.5 169 74.0
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 4.5e-68 261.5 170 74.1
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.9e-68 261.2 170 73.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 7.7e-68 260.8 168 75.0
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-67 260.4 174 72.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.0e-67 260.4 170 72.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-67 260.0 170 72.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-67 260.0 168 75.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-67 259.6 174 71.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.7e-67 259.6 168 73.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.7e-67 259.6 172 72.7
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.0e-67 258.1 170 73.5
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 6.5e-67 257.7 168 72.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 8.5e-67 257.3 170 72.4
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 8.5e-67 257.3 168 72.6
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 8.5e-67 257.3 168 72.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.5e-67 257.3 168 72.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.1e-66 256.9 171 73.1
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-66 256.9 168 72.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.5e-66 256.5 168 72.0
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.5e-66 256.5 168 72.0
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.5e-66 256.5 170 71.8
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 1.9e-66 256.1 168 72.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-66 255.4 166 74.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-66 255.4 166 74.7
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 5.5e-66 254.6 168 71.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 5.5e-66 254.6 168 71.4
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.2e-65 253.4 168 70.8
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.2e-65 253.4 170 71.8
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.2e-65 253.4 168 72.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.7e-65 252.3 168 70.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.6e-65 251.9 172 72.1
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 8.0e-65 250.8 170 70.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 8.0e-65 250.8 173 72.3
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.0e-64 250.4 171 69.6
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.0e-64 250.4 170 71.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.4e-64 250.0 167 73.1
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.8e-64 249.6 168 69.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.3e-64 249.2 169 71.0
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.3e-64 249.2 172 72.1
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 3.0e-64 248.8 168 69.6
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.8e-64 247.3 165 73.3
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 8.8e-64 247.3 170 70.0
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 8.8e-64 247.3 167 73.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.1e-63 246.9 167 73.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.1e-63 246.9 170 70.6
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.5e-63 246.5 167 73.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-63 246.5 171 70.2
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.5e-63 246.5 171 68.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.0e-63 246.1 174 66.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.0e-63 246.1 170 70.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.0e-63 246.1 170 70.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.6e-63 245.7 165 74.5
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.3e-63 245.4 170 68.8
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.3e-63 245.4 167 70.7
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.4e-63 245.0 168 69.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.4e-63 245.0 170 70.0
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-62 243.4 162 73.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.2e-62 242.7 169 71.0
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.8e-62 242.3 171 69.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 4.8e-62 241.5 165 72.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.3e-62 241.1 174 68.4
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-61 240.0 172 67.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.1e-61 238.8 174 66.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.2e-60 236.9 170 68.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.2e-60 236.9 174 66.1
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.0e-60 236.1 175 67.4
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-60 235.7 171 67.3
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 5.9e-60 234.6 160 66.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.0e-59 233.8 162 68.5
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 6.5e-59 231.1 170 61.8
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.5e-58 229.9 164 65.9
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.5e-58 229.9 161 68.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 9.4e-58 227.3 174 62.6
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.2e-57 226.9 164 65.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.7e-57 224.9 161 69.6
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 6.1e-57 224.6 167 64.7
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 8.8e-56 220.7 166 67.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.8e-56 220.7 166 67.5
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.0e-55 219.5 170 66.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.4e-55 218.8 166 66.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 4.4e-55 218.4 174 60.3
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.5e-55 217.6 165 64.2
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.5e-55 217.6 166 66.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 9.8e-55 217.2 131 75.6
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-53 213.4 180 62.8
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 4.1e-53 211.8 131 74.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 9.1e-53 210.7 161 60.9
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.2e-52 210.3 157 63.7
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.7e-52 209.1 140 77.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.0e-51 207.2 165 60.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 8.5e-51 204.1 159 64.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.5e-50 202.6 164 60.4
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.5e-50 202.6 133 78.2
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.5e-50 201.4 156 61.5
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.1e-49 199.5 129 76.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.7e-49 198.4 170 58.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 4.0e-48 195.3 161 62.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.8e-48 194.5 139 68.3
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-47 193.4 170 58.2
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 4.4e-47 191.8 129 72.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.4e-47 191.8 153 58.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.7e-46 189.9 159 64.8
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.8e-46 189.1 167 58.7
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 3.1e-45 185.7 164 58.5
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.1e-45 185.3 125 72.0
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.5e-44 181.8 143 62.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.9e-43 179.1 169 56.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.5e-42 176.0 174 56.3
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.8e-41 172.6 157 52.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.8e-41 172.6 174 55.2
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.6e-41 172.2 174 54.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.7e-39 164.9 113 76.1
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-35 154.1 99 74.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.7e-35 153.3 90 81.1
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.5e-31 137.9 93 69.9
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.7e-30 135.6 150 42.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 7.0e-29 131.3 95 63.2
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.0e-27 127.5 91 63.7
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.9e-26 123.2 174 42.5
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-23 114.0 73 69.9
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-17 92.4 79 55.7
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.1e-12 76.6 52 65.4
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-12 75.9 53 69.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.5e-10 70.5 188 30.9
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.9e-10 70.1 120 38.3
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.1e-09 66.6 175 32.0
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 8.1e-09 64.7 88 39.8
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 4.0e-08 62.4 61 44.3
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-07 60.8 33 78.8
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.2e-07 60.8 83 42.2
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 2.6e-07 59.7 32 81.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.4e-07 59.3 33 78.8
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 7.6e-07 58.2 32 78.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 9.9e-07 57.8 39 59.0


User provided reference genes

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