Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.2e-107 393.3 212 100.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.3e-73 278.5 209 70.3
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.4e-71 273.5 208 70.2
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 8.4e-69 264.2 197 68.5
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 3.2e-68 262.3 209 67.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.0e-66 257.3 210 63.8
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 5.1e-66 255.0 210 62.9
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.7e-65 251.5 209 63.6
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.3e-64 250.4 210 64.3
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.1e-64 249.6 211 64.0
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.4e-63 246.9 210 63.3
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 9.0e-63 244.2 210 63.3
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 1.5e-62 243.4 209 61.2
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.5e-62 243.4 210 62.4
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.5e-62 243.4 210 61.0
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.4e-62 242.3 209 64.1
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.5e-62 241.9 210 62.9
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 5.8e-62 241.5 211 59.7
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.3e-61 240.4 211 62.1
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 1.7e-61 240.0 210 61.0
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.1e-60 237.3 215 58.6
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.1e-60 237.3 210 60.5
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 5.5e-60 235.0 209 58.9
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 9.3e-60 234.2 209 57.4
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.6e-59 233.4 208 59.1
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.5e-59 232.3 209 56.9
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 6.1e-59 231.5 211 60.7
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.0e-58 230.7 210 58.6
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.0e-58 230.7 215 57.2
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.8e-58 229.9 209 59.8
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 3.0e-58 229.2 211 60.7
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 5.1e-58 228.4 210 58.6
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 8.7e-58 227.6 209 59.8
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.5e-57 226.9 211 56.4
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.9e-57 226.5 210 56.2
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.5e-57 226.1 208 57.2
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.3e-57 225.7 211 59.7
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 4.3e-57 225.3 209 57.4
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 7.4e-57 224.6 210 57.1
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 1.3e-56 223.8 210 56.7
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.3e-56 223.8 210 55.2
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 2.2e-56 223.0 213 58.2
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 2.8e-56 222.6 210 57.1
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.8e-56 222.6 211 57.8
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 4.8e-56 221.9 205 59.5
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 4.8e-56 221.9 210 56.7
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 8.2e-56 221.1 215 55.3
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 8.2e-56 221.1 210 55.7
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.1e-55 220.7 207 57.5
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.8e-55 219.9 213 55.9
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.1e-55 218.8 213 54.9
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.5e-54 216.9 208 56.7
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.5e-54 216.9 211 55.9
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.0e-54 216.5 209 55.5
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.0e-54 216.5 211 56.4
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 3.4e-54 215.7 211 55.9
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 3.4e-54 215.7 211 55.5
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.0e-53 214.2 211 54.0
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 1.7e-53 213.4 211 54.5
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.2e-53 213.0 211 55.5
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 3.8e-53 212.2 211 53.6
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 5.0e-53 211.8 210 55.2
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 1.1e-52 210.7 200 56.0
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.9e-52 209.9 200 56.0
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 3.2e-52 209.1 211 54.5
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 5.5e-52 208.4 207 54.1
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 5.5e-52 208.4 198 56.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.6e-51 206.8 211 55.9
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 4.6e-51 205.3 210 52.4
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 7.9e-51 204.5 210 53.3
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.0e-50 204.1 213 52.6
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.0e-50 204.1 218 53.7
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.4e-50 203.8 213 52.6
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.8e-50 203.4 208 52.9
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 3.0e-50 202.6 211 53.6
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 5.1e-50 201.8 209 52.6
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 6.7e-50 201.4 209 51.7
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 6.7e-50 201.4 212 52.4
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.5e-49 200.3 212 51.9
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 5.7e-49 198.4 218 51.8
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 7.4e-49 198.0 209 52.6
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.3e-48 197.2 173 61.3
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.7e-48 196.8 212 50.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.2e-48 196.4 211 51.7
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.8e-48 196.1 211 50.2
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 4.8e-48 195.3 209 51.2
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 8.2e-48 194.5 211 51.2
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.4e-47 193.7 214 50.9
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 1.4e-47 193.7 210 52.9
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.8e-47 193.4 210 52.4
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.8e-47 193.4 207 51.2
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 2.4e-47 193.0 215 48.4
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.1e-47 192.6 201 53.7
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 4.1e-47 192.2 210 52.4
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.5e-46 190.3 218 48.6
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.6e-46 189.5 215 50.2
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 3.4e-46 189.1 210 51.4
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.3e-45 187.2 209 50.7
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.7e-45 186.8 213 49.3
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.8e-45 185.7 211 50.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 3.8e-45 185.7 210 49.5
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 8.5e-45 184.5 212 48.6
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.9e-44 183.3 199 51.3
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 4.2e-44 182.2 213 50.7
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 7.2e-44 181.4 215 48.8
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 1.2e-43 180.6 214 48.1
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.6e-43 180.3 209 48.3
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.6e-43 180.3 208 49.5
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 7.9e-43 177.9 219 46.1
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.4e-42 177.2 192 50.5
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 5.1e-42 175.3 206 49.5
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-41 174.1 210 50.0
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 3.3e-41 172.6 214 43.9
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 5.7e-41 171.8 200 48.0
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 3.7e-40 169.1 200 48.0
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 3.7e-40 169.1 206 48.1
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 8.2e-40 167.9 192 49.0
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 3.1e-39 166.0 205 47.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.2e-38 164.1 209 45.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.0e-38 163.3 206 46.6
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 3.5e-38 162.5 196 49.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.7e-37 160.2 218 45.4
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.7e-37 160.2 208 44.2
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.8e-37 159.1 196 47.4
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.8e-37 159.1 196 47.4
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 3.8e-37 159.1 139 59.0
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 5.0e-37 158.7 208 44.2
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 8.5e-37 157.9 161 51.6
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.5e-36 157.1 207 42.5
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.9e-36 156.8 188 48.4
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.5e-36 156.4 196 46.4
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 2.5e-36 156.4 196 48.0
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 5.5e-36 155.2 196 46.4
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 4.7e-35 152.1 215 44.2
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 4.7e-35 152.1 215 43.7
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 6.1e-35 151.8 198 45.5
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 6.1e-35 151.8 206 46.1
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.8e-34 150.2 212 45.8
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.1e-33 147.5 142 54.9
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.1e-31 141.0 217 41.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 4.5e-30 135.6 216 40.7
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 7.7e-30 134.8 216 41.7
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 2.2e-29 133.3 213 42.3
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 3.2e-28 129.4 203 39.4
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 4.2e-28 129.0 214 41.1
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.1e-27 126.7 138 51.4
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 4.0e-26 122.5 115 57.4
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 2.0e-25 120.2 203 38.9
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.6e-25 119.8 137 48.9
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.0e-23 111.7 136 47.1
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 4.2e-20 102.4 116 48.3
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 2.4e-07 60.1 85 43.5
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 9.2e-07 58.2 88 40.9


User provided reference genes

Program Settings