Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 4.2e-150 534.6 267 100.0
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.5e-120 435.3 218 97.2
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.2e-96 357.1 231 75.8
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.5e-96 355.5 232 75.4
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.0e-95 354.0 232 75.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.3e-95 352.8 237 73.4
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.0e-95 352.4 233 74.2
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 3.0e-95 352.4 241 74.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.0e-95 352.4 231 71.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.6e-95 351.3 230 75.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.5e-94 350.1 235 74.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 3.3e-94 349.0 232 72.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 7.3e-94 347.8 231 73.6
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.8e-93 345.9 236 72.5
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.4e-92 343.6 235 74.5
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 2.3e-92 342.8 235 73.2
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.3e-92 342.8 236 72.0
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 4.0e-92 342.0 234 73.9
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.5e-91 340.1 234 72.2
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.0e-91 339.7 221 74.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 3.4e-91 339.0 235 72.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 5.8e-91 338.2 234 71.8
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.3e-90 337.0 219 72.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.7e-90 336.7 246 71.1
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.2e-90 336.3 234 70.1
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 4.9e-90 335.1 234 70.1
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.4e-90 334.3 234 70.9
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.4e-89 333.6 235 71.9
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.4e-89 332.8 234 70.5
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 3.2e-89 332.4 234 70.1
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 4.1e-89 332.0 231 71.0
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 5.4e-89 331.6 234 70.5
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.4e-89 331.6 235 71.5
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 7.1e-89 331.3 234 70.9
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.1e-89 331.3 234 69.7
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 1.6e-88 330.1 232 70.3
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.1e-88 329.7 235 71.5
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 2.7e-88 329.3 234 69.7
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.7e-88 329.3 234 69.7
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.7e-88 329.3 234 69.7
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.7e-88 329.3 220 72.7
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.3e-87 326.2 233 71.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.0e-87 325.9 234 67.9
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 5.1e-87 325.1 231 71.4
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 6.6e-87 324.7 240 66.7
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 6.6e-87 324.7 235 68.9
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.6e-87 324.3 217 70.5
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 8.6e-87 324.3 230 66.5
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-86 323.9 235 69.4
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.5e-86 322.8 235 68.9
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.5e-86 322.8 225 72.9
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.5e-86 322.8 233 70.4
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.5e-86 322.8 242 68.2
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 4.3e-86 322.0 236 69.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 5.6e-86 321.6 235 68.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 5.6e-86 321.6 232 68.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 9.6e-86 320.9 232 68.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 9.6e-86 320.9 233 68.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-85 320.5 221 70.1
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 1.2e-85 320.5 235 67.7
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.8e-85 319.3 233 69.1
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.8e-85 319.3 221 70.1
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-84 317.0 234 67.5
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.4e-84 317.0 234 67.5
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.2e-84 315.1 221 70.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.2e-83 313.9 235 68.9
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-83 312.4 221 71.0
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 7.6e-83 311.2 213 70.0
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 9.9e-83 310.8 234 64.1
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.8e-82 308.9 231 68.4
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.8e-82 308.9 231 68.4
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.4e-82 307.8 214 69.2
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 8.4e-82 307.8 239 65.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.4e-81 305.1 214 69.6
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 9.3e-81 304.3 239 64.4
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.6e-80 303.5 233 66.1
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.6e-80 303.5 233 66.1
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.1e-80 303.1 212 70.8
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 3.5e-80 302.4 235 63.8
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 5.1e-79 298.5 242 61.6
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.5e-78 297.0 236 63.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.3e-78 295.4 237 61.6
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 5.6e-78 295.0 237 60.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 9.6e-78 294.3 240 61.7
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.3e-77 293.9 231 63.2
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.1e-77 293.1 232 61.6
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 6.2e-77 291.6 232 61.6
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 6.2e-77 291.6 232 62.5
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.1e-76 290.8 232 62.9
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.1e-76 290.8 234 63.2
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.4e-76 290.4 240 60.4
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.4e-76 289.7 234 64.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 3.1e-76 289.3 232 61.6
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.0e-75 286.6 232 60.8
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.6e-75 286.2 212 68.4
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 5.8e-75 285.0 232 61.2
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 9.9e-75 284.3 197 68.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 2.2e-74 283.1 227 64.8
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.2e-74 283.1 233 63.1
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.9e-73 280.0 221 64.7
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 7.1e-73 278.1 241 61.8
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.2e-72 277.3 237 59.9
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.1e-72 276.6 246 58.1
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.0e-72 275.0 221 62.0
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.0e-71 274.2 232 59.5
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.3e-71 273.1 233 60.1
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 3.9e-71 272.3 241 59.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 8.7e-71 271.2 232 60.3
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 5.6e-70 268.5 238 58.0
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.6e-70 267.7 185 69.7
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.4e-68 263.8 221 60.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.8e-68 263.5 182 67.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.1e-68 262.7 217 58.1
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.2e-67 260.8 233 57.1
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.6e-67 259.6 237 58.2
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 7.6e-67 258.1 241 54.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.8e-66 255.8 221 59.7
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 3.2e-65 252.7 229 59.4
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.9e-63 245.7 220 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.8e-60 236.9 244 51.6
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.0e-59 233.4 222 54.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.2e-58 229.9 220 50.5
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 1.6e-56 223.8 191 58.6
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.1e-56 223.4 240 50.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.0e-55 219.5 178 55.1
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 6.7e-55 218.4 222 49.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 6.7e-55 218.4 230 50.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 8.7e-55 218.0 198 56.6
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.3e-53 211.8 230 52.6
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.4e-51 206.1 239 48.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.3e-50 204.1 202 51.0
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.3e-46 189.5 216 46.3
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.3e-45 187.6 107 76.6
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 4.2e-41 172.6 106 74.5
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-40 171.0 106 73.6
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 7.4e-38 161.8 180 49.4
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 6.3e-37 158.7 110 70.0
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.7e-35 151.8 119 62.2
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.4e-33 147.5 108 66.7
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 4.5e-27 125.9 78 75.6
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 2.2e-26 123.6 179 35.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.0e-26 122.5 74 77.0
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.1e-24 117.1 219 35.6
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.4e-23 114.4 74 67.6
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.2e-21 107.1 94 58.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.8e-20 104.0 268 26.5
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.7e-19 100.1 111 47.7
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.7e-19 100.1 227 30.4
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.5e-19 99.8 52 86.5
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.4e-12 77.0 199 29.1


User provided reference genes

Program Settings