Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 3.6e-164 581.6 322 100.0
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 8.6e-65 251.5 329 52.3
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.0e-62 244.6 317 51.7
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 7.0e-59 231.9 329 48.3
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 1.2e-58 231.1 330 48.8
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 7.8e-58 228.4 281 50.5
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.5e-56 224.2 330 48.2
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.1e-54 218.0 295 49.5
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.8e-54 217.2 226 56.6
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 2.0e-53 213.8 295 49.5
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.7e-52 210.7 276 49.3
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.9e-52 209.9 335 45.1
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 6.4e-52 208.8 306 45.1
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.3e-52 208.4 332 47.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.4e-51 207.6 194 60.3
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.4e-51 207.6 294 49.0
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.4e-51 205.7 314 44.6
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.2e-50 204.5 333 42.9
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.6e-50 204.1 327 45.6
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 3.5e-50 203.0 304 46.1
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 3.5e-50 203.0 200 57.5
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 4.6e-50 202.6 304 46.1
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.6e-50 202.6 276 49.6
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 7.8e-50 201.8 200 57.0
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 2.3e-49 200.3 299 47.8
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.0e-49 199.9 195 57.4
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.9e-49 199.5 327 41.6
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.1e-48 198.0 206 58.3
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 2.5e-48 196.8 304 46.1
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 2.5e-48 196.8 196 57.1
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 5.6e-48 195.7 280 46.4
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.3e-48 195.3 300 46.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 7.3e-48 195.3 234 53.0
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 7.3e-48 195.3 234 54.7
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.6e-47 194.1 199 57.8
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.6e-47 193.0 234 53.8
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.2e-45 188.0 306 45.8
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.5e-45 187.6 328 40.2
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.0e-45 187.2 260 46.2
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.0e-45 187.2 281 46.3
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.6e-45 186.8 301 42.9
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 2.6e-45 186.8 193 60.6
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 2.6e-45 186.8 317 44.5
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.3e-44 184.5 213 52.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 1.3e-44 184.5 241 49.4
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 1.3e-44 184.5 324 42.9
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-44 184.5 270 46.3
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.3e-44 184.5 206 55.8
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.7e-44 184.1 311 44.1
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 2.2e-44 183.7 284 47.5
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 2.9e-44 183.3 197 56.9
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 6.4e-44 182.2 207 55.6
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 8.4e-44 181.8 212 54.2
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 8.4e-44 181.8 212 54.2
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 1.9e-43 180.6 319 43.3
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 3.2e-43 179.9 197 56.9
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 4.1e-43 179.5 196 56.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.2e-42 177.9 279 41.6
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 1.6e-42 177.6 298 43.3
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.6e-42 177.6 194 55.2
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.1e-42 177.2 197 54.8
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 2.7e-42 176.8 210 53.8
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 2.7e-42 176.8 198 53.5
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 3.5e-42 176.4 287 42.5
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.0e-41 174.9 219 52.5
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.0e-41 174.9 279 45.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 3.0e-41 173.3 159 62.9
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 3.0e-41 173.3 191 56.0
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 6.6e-41 172.2 191 55.5
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 8.6e-41 171.8 195 53.8
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 8.6e-41 171.8 185 55.7
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-40 171.4 223 49.3
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 1.5e-40 171.0 205 54.1
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 3.3e-40 169.9 258 47.7
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.3e-40 169.5 304 43.1
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 7.3e-40 168.7 213 52.1
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 9.6e-40 168.3 191 53.9
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 9.6e-40 168.3 191 53.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.2e-39 167.9 191 54.5
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.6e-39 167.5 200 52.0
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 2.1e-39 167.2 193 53.9
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.8e-39 166.8 191 53.9
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 3.6e-39 166.4 232 48.3
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 3.6e-39 166.4 190 54.2
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.2e-39 165.6 145 66.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 8.1e-39 165.2 195 54.9
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 8.1e-39 165.2 191 53.4
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 8.1e-39 165.2 191 53.4
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 8.1e-39 165.2 202 53.0
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.4e-38 163.7 176 58.0
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.4e-38 163.7 209 47.4
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 4.0e-38 162.9 211 49.8
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 4.0e-38 162.9 211 49.8
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.5e-37 161.0 280 42.1
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.0e-37 160.6 234 45.7
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 2.0e-37 160.6 236 45.3
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 3.4e-37 159.8 227 48.0
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 2.2e-36 157.1 288 42.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 2.9e-36 156.8 285 42.5
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.8e-36 156.4 222 49.5
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.9e-36 156.0 143 61.5
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.4e-36 155.6 199 48.7
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.2e-35 153.3 311 37.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 5.4e-35 152.5 379 34.6
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 7.1e-35 152.1 205 47.8
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 9.3e-35 151.8 220 45.9
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.2e-34 151.4 220 45.9
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 3.0e-33 146.7 346 34.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 5.1e-33 146.0 265 43.4
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 6.6e-33 145.6 205 46.3
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 8.7e-33 145.2 106 76.4
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 4.3e-32 142.9 108 72.2
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 9.6e-32 141.7 219 42.9
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.8e-31 140.2 187 47.6
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 3.6e-31 139.8 164 53.7
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 3.6e-31 139.8 151 58.3
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 4.8e-31 139.4 214 43.0
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 4.8e-31 139.4 142 60.6
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.4e-30 137.9 188 45.2
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.4e-30 137.9 163 56.4
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.8e-30 137.5 278 37.8
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.4e-30 137.1 133 55.6
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.2e-29 134.8 155 54.8
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 7.6e-29 132.1 231 41.1
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.4e-27 127.9 158 48.7
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 3.2e-27 126.7 224 42.9
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.3e-25 120.6 234 39.3
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 3.9e-25 119.8 183 40.4
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.9e-24 117.5 108 65.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.6e-23 114.4 84 75.0
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.6e-23 113.2 189 43.9
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.9e-19 100.9 123 55.3
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.4e-19 100.5 105 53.3
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.4e-19 100.5 97 60.8
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 2.3e-17 94.0 154 40.9
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 7.4e-16 89.0 180 39.4
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 7.4e-16 89.0 200 33.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.2e-13 81.6 108 43.5
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.8e-13 79.3 80 58.8
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 7.6e-13 79.0 83 53.0
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 6.5e-12 75.9 90 53.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 8.4e-12 75.5 61 68.9
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.1e-11 75.1 149 37.6
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 6.7e-09 65.9 46 78.3
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.1e-08 65.1 95 49.5
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 3.3e-08 63.5 134 34.3
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.3e-07 61.6 57 61.4
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.1e-07 60.8 49 69.4


User provided reference genes

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