Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.6e-261 905.6 456 100.0
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.9e-209 730.3 458 80.1
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.2e-207 725.7 459 79.1
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.2e-206 721.8 442 80.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 6.6e-204 714.1 458 77.3
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.2e-202 709.9 450 77.8
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.6e-202 709.5 462 77.5
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 2.1e-202 709.1 458 76.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 1.1e-201 706.8 462 77.5
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 2.4e-201 705.7 454 76.4
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.2e-200 703.4 446 77.1
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 2.6e-200 702.2 457 75.9
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 2.6e-200 702.2 446 77.4
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.8e-200 701.0 456 75.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.6e-200 700.7 456 75.2
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.6e-200 700.7 458 75.8
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.6e-200 700.7 447 77.2
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.7e-199 699.5 458 76.2
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.1e-198 696.8 459 77.1
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 1.1e-198 696.8 449 75.5
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.1e-198 696.8 458 75.5
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.4e-198 696.4 450 75.6
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 4.2e-198 694.9 446 76.0
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 7.1e-198 694.1 449 75.3
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 7.1e-198 694.1 448 76.1
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.2e-197 693.3 453 75.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.6e-197 693.0 453 75.7
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.1e-197 692.6 449 75.3
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.6e-197 691.4 457 75.7
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 7.8e-197 690.6 446 75.6
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 1.7e-196 689.5 458 75.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.0e-196 688.7 463 75.2
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 5.1e-196 688.0 459 76.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 8.7e-196 687.2 447 74.7
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.5e-195 686.4 453 75.1
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 5.6e-195 684.5 455 75.8
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 9.6e-195 683.7 446 75.8
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 8.1e-194 680.6 454 74.9
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.4e-193 679.9 456 73.9
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.4e-193 679.9 449 73.7
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.4e-193 679.1 447 75.4
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.1e-193 678.7 423 76.8
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 5.3e-193 677.9 456 74.1
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.6e-192 675.6 458 73.6
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.5e-192 674.9 444 75.0
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 4.5e-192 674.9 444 75.0
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 7.6e-192 674.1 447 73.6
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.6e-192 674.1 458 73.4
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 9.9e-192 673.7 454 74.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.3e-191 673.3 458 72.5
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 2.9e-191 672.2 454 73.8
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.9e-191 671.4 448 73.7
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 4.9e-191 671.4 454 73.8
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.9e-191 671.4 457 71.8
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 4.9e-191 671.4 448 73.2
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.4e-191 671.0 458 73.4
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 6.4e-191 671.0 452 72.6
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 8.4e-191 670.6 454 73.6
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 8.4e-191 670.6 454 73.6
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 8.4e-191 670.6 449 74.4
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 8.4e-191 670.6 450 72.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 8.4e-191 670.6 458 73.4
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.4e-190 669.8 455 72.7
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.9e-190 669.5 455 74.1
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.9e-190 669.5 455 73.6
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 5.4e-190 667.9 449 72.8
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 9.3e-190 667.2 456 73.5
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 3.5e-189 665.2 442 73.5
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.6e-189 664.8 456 72.6
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 4.6e-189 664.8 457 73.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.3e-188 663.3 464 72.0
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.8e-188 662.9 454 72.5
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 8.7e-188 660.6 458 72.9
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 8.7e-188 660.6 449 74.2
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.5e-187 659.8 449 71.9
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 2.5e-187 659.1 423 74.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 4.3e-187 658.3 456 72.6
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.8e-186 655.6 455 72.1
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.4e-185 653.3 468 71.6
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.4e-185 653.3 463 71.7
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 3.1e-185 652.1 463 72.1
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 6.9e-185 651.0 446 73.3
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 9.0e-185 650.6 430 73.5
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.5e-184 649.8 452 70.8
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.5e-184 649.8 463 70.6
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 4.5e-184 648.3 447 72.0
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 4.5e-184 648.3 464 71.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.9e-183 645.6 463 71.1
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.4e-182 643.3 464 70.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 2.4e-182 642.5 463 71.3
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 3.2e-182 642.1 463 71.1
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 3.2e-182 642.1 459 70.8
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.1e-182 641.0 455 70.5
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 2.7e-181 639.0 481 68.0
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 6.0e-181 637.9 464 70.0
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.1e-180 634.8 457 70.0
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.1e-180 634.8 436 71.1
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.5e-179 632.5 436 70.9
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.3e-178 630.2 454 69.6
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 3.7e-178 628.6 459 69.3
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.2e-178 627.9 437 70.5
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 6.2e-178 627.9 448 69.4
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 8.2e-178 627.5 448 72.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.3e-175 620.2 424 71.9
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.6e-173 613.2 454 66.5
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 6.0e-173 611.3 470 67.4
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 7.4e-171 604.4 567 57.7
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.1e-170 602.8 460 67.0
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 3.7e-170 602.1 442 67.4
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 5.9e-168 594.7 455 65.9
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.8e-167 592.0 361 78.4
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.8e-167 592.0 455 65.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.4e-166 590.1 484 62.8
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.2e-165 587.0 455 65.3
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 6.7e-164 581.3 450 64.9
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 2.2e-162 576.2 459 64.3
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 6.3e-162 574.7 402 69.2
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 2.0e-155 553.1 422 64.7
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 8.2e-154 547.7 447 61.7
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 5.5e-150 535.0 457 60.8
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 7.2e-150 534.6 450 64.0
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.8e-148 530.0 374 70.9
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 9.7e-147 524.2 365 72.6
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.1e-145 518.8 400 66.8
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.6e-141 506.9 465 58.5
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.7e-141 506.1 351 70.4
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 4.8e-138 495.4 437 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.8e-137 493.4 452 59.5
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 5.3e-137 491.9 409 61.9
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 2.7e-136 489.6 367 65.7
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.3e-132 476.5 455 55.6
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 5.2e-124 448.7 457 54.0
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 4.9e-122 442.2 324 66.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.6e-109 399.4 286 69.6
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.1e-100 371.3 337 59.3
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.3e-95 353.6 257 70.4
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 8.7e-87 325.1 262 65.3
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.4e-84 317.8 211 75.4
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.8e-84 317.4 212 73.1
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 7.3e-78 295.4 428 42.3
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.7e-74 284.3 197 70.1
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 1.9e-65 254.2 180 70.0
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.5e-51 208.0 154 68.8
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 9.4e-49 198.7 138 73.2
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.2e-37 161.0 222 44.1
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 2.6e-35 154.1 150 55.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 9.4e-33 145.6 149 55.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.4e-20 105.1 60 85.0
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.7e-11 74.3 56 60.7


User provided reference genes

Program Settings