Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 7.0e-141 503.8 235 100.0
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 6.8e-136 487.3 235 95.7
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 1.2e-132 476.5 233 93.1
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 2.0e-132 475.7 233 92.7
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 4.6e-132 474.6 235 91.9
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 1.5e-130 469.5 233 90.1
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 1.9e-130 469.2 232 90.9
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 3.6e-129 464.9 233 88.4
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.0e-128 463.4 233 88.0
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 1.0e-128 463.4 233 89.3
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 1.4e-128 463.0 233 88.8
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.4e-128 463.0 233 87.6
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.4e-128 463.0 233 89.7
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 3.1e-128 461.8 233 87.6
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 4.0e-128 461.5 233 87.1
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 5.2e-128 461.1 232 87.5
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.2e-127 459.9 233 87.1
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.5e-127 459.5 233 85.8
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 2.6e-127 458.8 233 87.6
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 2.6e-127 458.8 233 88.0
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 3.4e-127 458.4 233 88.4
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 4.4e-127 458.0 233 87.1
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 4.4e-127 458.0 235 89.4
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 5.8e-127 457.6 233 86.3
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 5.8e-127 457.6 233 86.7
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 7.5e-127 457.2 233 87.6
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 1.3e-126 456.4 233 85.8
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 2.2e-126 455.7 235 85.1
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 2.2e-126 455.7 233 85.8
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 2.9e-126 455.3 233 86.3
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 3.7e-126 454.9 233 85.8
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.7e-126 454.9 233 87.1
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.7e-126 454.9 233 85.8
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 3.7e-126 454.9 233 86.3
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 4.9e-126 454.5 233 88.0
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.9e-126 454.5 232 86.6
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 4.9e-126 454.5 233 86.3
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 4.9e-126 454.5 233 85.8
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 6.4e-126 454.1 235 86.4
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 1.1e-125 453.4 233 85.8
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.1e-125 453.4 233 85.4
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 1.4e-125 453.0 235 88.5
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 1.9e-125 452.6 233 85.4
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.9e-125 452.6 233 85.4
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 1.9e-125 452.6 233 85.4
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 2.4e-125 452.2 233 85.4
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 3.2e-125 451.8 233 86.3
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 3.2e-125 451.8 233 85.8
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 3.2e-125 451.8 233 85.8
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 4.1e-125 451.4 233 87.1
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 4.1e-125 451.4 233 84.5
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 5.4e-125 451.1 233 86.3
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 5.4e-125 451.1 233 86.3
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 9.2e-125 450.3 233 86.7
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 9.2e-125 450.3 233 85.0
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.6e-124 449.5 233 86.3
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.6e-124 449.5 235 84.7
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 2.7e-124 448.7 233 86.3
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.7e-124 448.7 232 85.3
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 2.7e-124 448.7 235 86.4
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 3.5e-124 448.4 233 86.3
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 4.6e-124 448.0 235 86.4
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 4.6e-124 448.0 233 84.5
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 4.6e-124 448.0 233 85.8
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 4.6e-124 448.0 233 84.5
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 6.0e-124 447.6 233 87.6
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 6.0e-124 447.6 232 85.8
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 7.8e-124 447.2 233 85.8
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.3e-123 446.4 233 86.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 1.3e-123 446.4 235 84.7
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 1.7e-123 446.0 233 86.3
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 1.7e-123 446.0 233 86.3
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 3.0e-123 445.3 232 85.3
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 3.9e-123 444.9 233 84.1
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 3.9e-123 444.9 257 79.8
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 3.9e-123 444.9 233 83.7
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 3.9e-123 444.9 242 83.1
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 3.9e-123 444.9 233 84.1
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 5.0e-123 444.5 233 83.3
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 1.5e-122 443.0 233 83.7
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 1.5e-122 443.0 233 83.7
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 1.9e-122 442.6 233 83.7
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 1.9e-122 442.6 233 83.7
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.9e-122 442.6 233 85.8
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 1.9e-122 442.6 233 84.1
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 1.9e-122 442.6 233 85.4
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 2.5e-122 442.2 242 81.4
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 3.3e-122 441.8 233 84.5
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 4.3e-122 441.4 240 82.5
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 5.6e-122 441.0 233 83.7
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 5.6e-122 441.0 235 85.1
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 5.6e-122 441.0 233 82.8
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 7.3e-122 440.7 233 83.3
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 7.3e-122 440.7 233 83.3
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 7.3e-122 440.7 232 84.9
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 9.5e-122 440.3 232 85.8
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 9.5e-122 440.3 233 83.3
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 2.1e-121 439.1 233 83.3
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 2.8e-121 438.7 233 83.3
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 6.2e-121 437.6 233 84.5
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 8.1e-121 437.2 233 82.8
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 8.1e-121 437.2 233 83.3
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 6.8e-120 434.1 235 83.0
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 1.5e-119 433.0 225 85.3
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 3.4e-119 431.8 233 82.8
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 3.4e-119 431.8 235 82.6
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 4.4e-119 431.4 273 75.1
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.7e-118 429.5 235 81.3
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 1.7e-118 429.5 235 81.3
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.2e-118 429.1 265 76.2
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 2.9e-118 428.7 235 82.1
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 3.5e-116 421.8 298 68.5
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.3e-115 419.1 204 90.7
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.2e-113 411.0 195 92.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.6e-111 405.6 194 92.8
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 3.4e-111 405.2 215 84.2
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 4.4e-111 404.8 192 94.3
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 2.9e-110 402.1 318 61.3
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 4.9e-110 401.4 223 81.6
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.1e-109 400.2 193 91.2
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 1.4e-109 399.8 189 95.2
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 3.2e-109 398.7 193 91.2
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 4.1e-109 398.3 192 91.1
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.1e-109 398.3 207 86.0
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 4.6e-108 394.8 193 90.7
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 6.0e-108 394.4 190 91.6
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 6.0e-108 394.4 193 90.7
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 1.0e-107 393.7 193 90.7
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 1.0e-107 393.7 193 90.7
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 1.0e-107 393.7 193 90.7
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 1.0e-107 393.7 193 90.7
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.7e-107 392.9 188 93.1
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.5e-106 389.8 227 79.3
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.8e-104 382.9 229 78.2
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 2.4e-104 382.5 235 78.3
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 1.3e-102 376.7 215 80.5
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 1.4e-101 373.2 233 76.4
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 8.1e-97 357.5 227 69.2
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.8e-96 356.3 186 85.5
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 1.7e-94 349.7 163 94.5
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.4e-93 345.9 163 92.6
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 5.4e-93 344.7 163 92.6
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 5.4e-93 344.7 225 66.2
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 9.3e-93 344.0 200 74.0
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 1.6e-92 343.2 202 74.8
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 6.6e-91 337.8 162 90.7
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 5.6e-90 334.7 163 89.6
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 8.1e-89 330.9 224 64.3
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.4e-88 330.1 189 79.9
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 4.3e-82 308.5 153 88.9
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 8.1e-81 304.3 163 83.4
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 9.0e-80 300.8 233 64.8
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 2.0e-79 299.7 232 63.4
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.3e-62 243.8 162 70.4
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 8.8e-51 204.5 140 71.4
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 1.5e-50 203.8 237 43.0
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 7.0e-40 168.3 79 92.4
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 5.9e-39 165.2 78 89.7
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 1.3e-38 164.1 112 67.9
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 6.3e-33 145.2 131 57.3
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 3.1e-32 142.9 131 58.0
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 4.1e-32 142.5 100 68.0
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 7.0e-32 141.7 100 68.0
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 3.5e-31 139.4 61 100.0
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 1.7e-30 137.1 200 36.0
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.8e-24 117.1 64 84.4
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 5.4e-24 115.5 103 57.3
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 7.0e-24 115.2 75 68.0
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 2.0e-23 113.6 72 70.8
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 3.5e-23 112.8 72 69.4
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 8.6e-22 108.2 48 95.8
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 1.1e-21 107.8 48 93.8
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 1.9e-21 107.1 72 68.1
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 3.9e-14 82.8 58 65.5
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 3.6e-12 76.3 80 46.2
BcaC02g07984 Brassica carinata HOM05D003702 ORTHO05D014526 2.3e-06 57.0 34 64.7


User provided reference genes

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