Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 8.6e-126 453.8 242 100.0
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.3e-105 386.7 242 86.4
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.3e-105 384.0 242 85.5
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.1e-103 379.4 243 84.0
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.7e-102 376.3 242 83.5
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.7e-102 376.3 243 83.5
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.9e-102 375.2 242 82.2
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 6.6e-102 374.4 243 83.1
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 6.6e-102 374.4 242 81.8
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.3e-101 371.7 242 82.6
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.3e-101 370.9 242 81.8
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.1e-100 369.4 243 83.5
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.8e-100 369.0 243 83.1
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 3.6e-100 368.6 242 81.0
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 4.7e-100 368.2 242 81.8
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 6.2e-100 367.9 242 81.8
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 8.1e-100 367.5 241 82.2
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 1.1e-99 367.1 242 80.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 3.1e-99 365.5 242 81.4
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 3.1e-99 365.5 242 81.4
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 5.2e-99 364.8 242 81.0
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 6.8e-99 364.4 242 80.2
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.6e-98 362.5 242 80.6
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 5.8e-98 361.3 242 78.9
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.8e-98 361.3 245 81.2
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 7.6e-98 360.9 242 79.8
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 9.9e-98 360.5 243 81.1
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 2.9e-97 359.0 242 79.8
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.9e-97 358.2 242 78.9
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.3e-97 357.5 242 78.9
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 5.4e-96 354.8 243 79.8
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 7.1e-96 354.4 242 78.5
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.2e-95 353.6 243 79.4
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 2.1e-95 352.8 242 79.3
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.1e-95 352.8 242 78.1
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.7e-95 352.4 283 70.7
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.6e-95 351.7 239 79.5
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 6.0e-95 351.3 245 78.4
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 7.8e-95 350.9 242 76.4
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.0e-94 350.5 243 77.0
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.0e-94 350.5 242 78.5
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.3e-94 350.1 242 76.9
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 1.3e-94 350.1 242 76.4
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.7e-94 349.7 238 78.2
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 3.0e-94 349.0 239 78.2
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 3.9e-94 348.6 243 78.2
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 3.9e-94 348.6 221 83.7
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.6e-94 347.8 243 77.0
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.5e-93 345.9 242 75.2
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.3e-93 345.5 243 77.0
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.3e-93 345.5 242 77.3
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 5.6e-93 344.7 245 75.9
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 6.2e-92 341.3 243 75.7
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 8.1e-92 340.9 242 74.4
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 1.4e-91 340.1 239 76.2
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.8e-91 339.7 242 78.1
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.4e-91 339.3 244 75.8
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 2.4e-91 339.3 246 74.0
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 4.0e-91 338.6 245 74.7
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 5.2e-91 338.2 242 72.3
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 6.8e-91 337.8 242 71.9
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 72.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 71.9
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 3.4e-90 335.5 242 71.9
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 9.9e-90 334.0 243 74.9
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 9.9e-90 334.0 243 75.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 1.3e-89 333.6 242 71.1
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 1.3e-89 333.6 243 73.7
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 71.5
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 73.6
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 71.9
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 71.5
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.2e-89 332.8 219 79.5
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 71.5
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 6.4e-89 331.3 281 67.3
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 6.4e-89 331.3 243 73.7
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.9e-88 329.7 246 69.5
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 73.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 71.5
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 4.2e-88 328.6 244 70.9
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 1.6e-87 326.6 244 70.9
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.6e-87 326.6 219 79.5
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.6e-87 326.6 270 66.3
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.1e-87 326.2 242 70.7
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.1e-87 326.2 244 74.6
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 69.8
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.5e-87 325.5 197 88.3
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 4.6e-87 325.1 242 70.2
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 70.4
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 70.4
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 3.0e-86 322.4 243 74.1
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.9e-86 322.0 244 71.7
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.9e-86 322.0 244 73.8
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 6.6e-86 321.2 222 77.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 6.6e-86 321.2 244 73.4
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 8.7e-86 320.9 242 71.1
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 8.7e-86 320.9 244 73.0
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 8.7e-86 320.9 242 70.2
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 1.5e-85 320.1 223 77.1
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.5e-85 319.3 196 85.2
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.5e-85 319.3 259 70.7
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 3.3e-85 318.9 224 74.6
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 3.3e-85 318.9 244 72.5
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 5.6e-85 318.2 244 71.3
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 9.6e-85 317.4 278 64.7
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.3e-84 317.0 259 70.7
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.3e-84 317.0 245 70.6
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 4.8e-84 315.1 196 85.2
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 4.0e-83 312.0 232 74.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.9e-83 311.2 199 83.4
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 9.0e-83 310.8 226 73.5
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-82 310.5 199 82.9
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.2e-82 310.5 246 71.5
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.2e-82 310.5 196 83.7
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.5e-82 310.1 199 83.4
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 3.4e-82 308.9 196 83.7
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 7.6e-82 307.8 291 61.2
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 9.9e-82 307.4 199 82.9
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.7e-81 306.6 198 79.3
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 6.4e-81 304.7 247 70.0
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.9e-80 303.1 288 61.5
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 2.1e-79 299.7 196 79.6
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 3.5e-79 298.9 241 68.5
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.9e-79 297.7 196 80.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 1.0e-78 297.4 245 66.5
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 2.5e-77 292.7 245 64.9
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.2e-73 279.6 180 81.7
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.4e-72 276.9 196 71.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 8.7e-70 267.7 175 80.6
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.4e-69 264.6 221 67.9
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.9e-64 250.0 188 69.7
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 5.5e-64 248.4 243 59.7
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.7e-60 235.7 196 69.4
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.2e-57 226.5 155 79.4
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 7.2e-56 221.5 224 57.1
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.8e-54 216.9 135 82.2
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 5.0e-49 198.7 155 66.5
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 2.1e-39 166.8 112 79.5
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.6e-39 166.0 149 63.1
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.6e-39 166.0 168 57.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.8e-38 163.7 131 66.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 9.1e-35 151.4 198 43.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 6.5e-33 145.2 238 45.8
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 7.2e-32 141.7 224 45.1
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.7e-28 130.6 206 37.4
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 5.3e-27 125.6 209 35.4
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.3e-25 120.9 236 39.4
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 5.0e-25 119.0 100 67.0
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.1e-23 113.6 193 36.3
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 4.7e-23 112.5 193 35.8
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 8.3e-20 101.7 83 66.3
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.8e-19 100.5 63 84.1
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.0e-17 94.7 177 42.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.6e-15 87.4 84 57.1
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.7e-12 76.3 64 68.8
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 1.2e-10 71.2 215 27.4
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 9.5e-08 61.6 41 82.9
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.2e-07 61.2 40 85.0


User provided reference genes

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