Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.2e-132 475.7 251 100.0
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 8.4e-76 287.7 201 74.6
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.9e-72 276.6 239 62.8
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 4.3e-72 275.4 202 70.8
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 7.4e-72 274.6 220 68.2
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 2.1e-71 273.1 237 62.0
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 3.7e-71 272.3 201 71.1
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.1e-70 270.8 203 70.4
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.4e-70 270.4 182 74.7
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 3.1e-70 269.2 177 75.7
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 4.1e-70 268.9 195 71.8
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 6.9e-70 268.1 208 70.7
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.5e-69 266.9 197 70.1
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.5e-69 266.9 196 72.4
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 2.0e-69 266.5 239 61.1
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 3.4e-69 265.8 182 74.2
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.0e-68 264.2 162 82.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 1.0e-68 264.2 198 69.7
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 2.2e-68 263.1 228 61.4
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 6.5e-68 261.5 195 70.3
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 1.4e-67 260.4 223 63.2
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 2.5e-67 259.6 195 70.3
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 4.2e-67 258.8 232 61.6
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 5.5e-67 258.5 195 67.2
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 5.5e-67 258.5 244 59.4
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 9.3e-67 257.7 219 61.2
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 9.3e-67 257.7 233 61.8
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.2e-66 257.3 160 79.4
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 2.1e-66 256.5 200 68.5
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.7e-66 256.1 241 59.3
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.7e-66 256.1 253 58.9
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 4.6e-66 255.4 199 66.3
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 7.9e-66 254.6 200 67.0
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 7.9e-66 254.6 200 67.0
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 7.9e-66 254.6 196 69.4
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.0e-65 254.2 203 66.0
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 1.3e-65 253.8 195 65.6
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 1.3e-65 253.8 180 71.1
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.3e-65 253.8 252 58.7
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.8e-65 253.4 195 69.7
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 2.3e-65 253.1 178 73.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 2.3e-65 253.1 195 69.7
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 3.0e-65 252.7 157 79.6
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 3.0e-65 252.7 237 59.1
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 3.9e-65 252.3 247 57.9
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 6.7e-65 251.5 195 65.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 6.7e-65 251.5 217 65.0
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 6.7e-65 251.5 221 65.6
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 8.7e-65 251.1 241 59.8
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.5e-64 250.4 201 66.2
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-64 250.4 199 63.8
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 5.7e-64 248.4 232 59.9
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 9.7e-64 247.7 229 56.3
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 9.7e-64 247.7 240 58.3
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.3e-63 247.3 205 62.4
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.6e-63 246.9 207 63.3
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 2.2e-63 246.5 159 76.1
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 2.2e-63 246.5 234 59.8
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.8e-63 246.1 236 58.9
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 2.8e-63 246.1 232 58.6
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 3.7e-63 245.7 222 60.4
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 3.7e-63 245.7 163 76.1
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 8.2e-63 244.6 233 59.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 8.2e-63 244.6 237 57.4
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-62 244.2 236 58.5
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.1e-62 244.2 236 58.5
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.4e-62 243.8 195 66.2
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.4e-62 243.0 193 67.9
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 2.4e-62 243.0 161 73.9
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 3.1e-62 242.7 196 65.3
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 3.1e-62 242.7 211 61.6
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 3.1e-62 242.7 237 57.8
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 4.1e-62 242.3 253 57.3
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 4.1e-62 242.3 235 56.2
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 5.3e-62 241.9 206 61.7
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 6.9e-62 241.5 195 66.2
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.9e-62 241.5 212 63.7
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 6.9e-62 241.5 159 73.6
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 9.0e-62 241.1 195 64.6
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-61 240.7 195 64.6
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 1.5e-61 240.4 162 75.3
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.4e-61 239.2 226 59.7
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 3.4e-61 239.2 222 60.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 7.7e-61 238.0 195 64.1
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.0e-60 237.7 199 64.3
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.3e-60 237.3 199 64.3
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.3e-60 237.3 197 64.0
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.7e-60 236.9 212 61.3
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 2.9e-60 236.1 198 63.6
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.5e-60 235.0 197 64.0
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 6.5e-60 235.0 197 63.5
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.1e-59 234.2 158 72.2
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 7.2e-59 231.5 162 71.6
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.2e-58 230.7 149 80.5
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.0e-57 227.6 251 53.0
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 2.2e-55 219.9 241 52.7
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 3.4e-53 212.6 248 51.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 4.5e-53 212.2 195 58.5
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 2.7e-50 203.0 138 72.5
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.1e-50 201.8 159 64.2
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.8e-49 200.3 163 61.3
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.3e-49 199.9 160 61.9
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.4e-46 190.7 185 56.2
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.9e-43 180.3 237 48.9
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 2.1e-42 176.8 160 60.6
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 4.0e-41 172.6 163 54.0
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 3.3e-40 169.5 160 58.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.9e-35 153.7 221 47.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 8.0e-34 148.3 199 47.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.8e-33 147.1 147 51.7
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 6.8e-33 145.2 167 45.5
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 8.8e-33 144.8 93 75.3
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 3.5e-29 132.9 161 45.3
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 4.5e-29 132.5 83 77.1
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 7.7e-29 131.7 84 75.0
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 5.0e-28 129.0 103 66.0
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 8.5e-28 128.3 111 61.3
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-27 127.5 111 61.3
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 4.7e-26 122.5 131 55.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-25 120.9 111 58.6
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 6.8e-25 118.6 112 61.6
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 2.2e-23 113.6 135 43.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.1e-22 111.3 100 60.0
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 1.3e-20 104.4 69 71.0
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 9.5e-19 98.2 129 47.3
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 6.4e-15 85.5 185 30.3
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.2e-14 83.2 106 46.2
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.5e-11 74.3 96 50.0
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 2.5e-11 73.6 119 38.7
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.1e-09 66.6 109 43.1
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.4e-08 62.8 120 42.5
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 2.4e-06 57.0 183 27.9


User provided reference genes

Program Settings