Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 4.2e-90 335.1 227 100.0
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 7.9e-65 251.1 147 83.0
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 5.3e-61 238.4 144 79.2
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.7e-59 233.4 139 80.6
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 2.2e-59 233.0 139 79.9
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 3.8e-59 232.3 139 82.0
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 5.0e-59 231.9 219 56.2
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 8.5e-59 231.1 139 80.6
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 8.5e-59 231.1 142 78.2
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 2.5e-58 229.6 217 55.8
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.5e-58 229.6 139 79.9
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 3.2e-58 229.2 219 57.5
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.2e-58 228.8 139 77.7
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 4.2e-58 228.8 142 77.5
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 4.2e-58 228.8 139 78.4
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 7.2e-58 228.0 139 79.1
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 9.4e-58 227.6 140 75.7
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 9.4e-58 227.6 139 75.5
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 2.7e-57 226.1 219 56.2
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.7e-57 226.1 143 76.9
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 2.7e-57 226.1 223 57.4
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 4.6e-57 225.3 140 80.0
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.1e-57 224.9 219 56.2
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 7.9e-57 224.6 219 55.7
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 1.4e-56 223.8 139 78.4
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 3.9e-56 222.2 149 71.1
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 5.1e-56 221.9 143 75.5
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 5.1e-56 221.9 143 75.5
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 6.7e-56 221.5 139 74.8
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 1.1e-55 220.7 138 75.4
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 1.1e-55 220.7 154 72.7
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 1.1e-55 220.7 217 55.3
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.1e-55 220.7 220 55.5
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.1e-55 220.7 139 76.3
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 2.0e-55 219.9 139 74.1
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 2.0e-55 219.9 149 71.1
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 3.3e-55 219.2 152 75.7
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 4.3e-55 218.8 139 76.3
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 4.3e-55 218.8 139 75.5
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 5.7e-55 218.4 143 77.6
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 5.7e-55 218.4 220 55.0
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 7.4e-55 218.0 140 73.6
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 7.4e-55 218.0 140 75.0
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 3.7e-54 215.7 141 70.9
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 6.3e-54 214.9 221 51.6
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 1.4e-53 213.8 145 69.0
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 3.1e-53 212.6 144 72.9
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 5.3e-53 211.8 140 71.4
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 5.3e-53 211.8 221 51.1
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 5.3e-53 211.8 148 66.9
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 6.9e-53 211.5 148 66.9
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.0e-52 209.9 145 66.9
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 7.7e-52 208.0 155 65.8
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 1.0e-51 207.6 132 75.0
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.3e-51 207.2 159 66.0
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 2.9e-51 206.1 145 66.9
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 5.0e-51 205.3 159 65.4
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 6.5e-51 204.9 139 71.2
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 4.2e-50 202.2 175 58.3
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 7.2e-50 201.4 141 66.7
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.2e-49 200.7 245 46.9
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 3.6e-49 199.1 140 66.4
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 6.1e-49 198.4 165 60.6
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 6.1e-49 198.4 143 66.4
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 3.9e-48 195.7 126 75.4
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.1e-47 194.1 143 67.1
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 1.5e-47 193.7 140 65.0
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 2.0e-47 193.4 140 65.0
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.0e-47 193.4 220 50.9
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 9.7e-47 191.0 139 65.5
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.3e-46 190.7 191 55.5
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 1.7e-46 190.3 139 69.1
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 4.8e-46 188.7 125 74.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 4.8e-46 188.7 140 62.9
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 8.2e-46 188.0 217 51.2
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 8.2e-46 188.0 139 62.6
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 8.2e-46 188.0 140 62.9
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.1e-45 187.6 143 66.4
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 1.4e-45 187.2 189 54.0
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.8e-45 186.8 295 43.7
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 4.1e-45 185.7 139 62.6
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 5.3e-45 185.3 139 61.9
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 1.5e-44 183.7 139 62.6
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.0e-43 181.0 139 61.9
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.0e-43 181.0 139 61.9
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.3e-43 180.6 143 64.3
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 1.1e-42 177.6 209 48.8
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 4.2e-42 175.6 143 62.2
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 9.4e-42 174.5 163 55.2
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 8.0e-41 171.4 125 63.2
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 1.8e-40 170.2 142 57.7
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.5e-39 167.2 157 57.3
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 7.5e-39 164.9 112 68.8
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 8.5e-35 151.4 124 66.9
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 5.7e-31 138.7 140 52.1
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 5.4e-29 132.1 93 68.8
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 6.5e-27 125.2 82 73.2
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 5.7e-23 112.1 86 59.3
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 2.2e-22 110.2 72 75.0
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 3.7e-22 109.4 101 57.4
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.1e-21 107.8 72 72.2
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 3.1e-21 106.3 69 71.0
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 4.5e-20 102.4 61 75.4
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 1.1e-18 97.8 70 64.3
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.6e-17 94.0 81 49.4
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.0e-16 91.3 81 49.4
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 4.0e-16 89.4 55 80.0
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 4.4e-15 85.9 97 45.4
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.5e-12 76.3 47 72.3
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 3.1e-08 63.2 117 30.8
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 3.1e-08 63.2 116 31.0
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 8.9e-08 61.6 123 31.7
CBR_g52628 Chara braunii HOM05D006959 ORTHO05D008808 2.0e-07 60.5 62 50.0
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 2.0e-07 60.5 127 29.1
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 5.8e-07 58.9 123 30.9
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 7.5e-07 58.5 107 29.9
vmacro21242 Vaccinium macrocarpon HOM05D000868 ORTHO05D000711 7.5e-07 58.5 136 32.4
Rhsim06G0083400 Rhododendron simsii HOM05D000868 ORTHO05D000711 9.8e-07 58.2 123 28.5
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 1.3e-06 57.8 109 29.4
PGR001G0003 Punica granatum HOM05D003946 ORTHO05D004485 1.7e-06 57.4 107 30.8
PGR044G0462 Punica granatum HOM05D003946 ORTHO05D004485 1.7e-06 57.4 107 30.8
MD08G1181000 Malus domestica HOM05D000868 ORTHO05D000711 2.2e-06 57.0 96 32.3
Lj4A625G10 Lonicera japonica HOM05D005920 ORTHO05D007211 3.7e-06 56.2 118 26.3
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.9e-06 55.8 123 30.1
FAN08G3479 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.9e-06 55.8 50 64.0
FAN21G2611 Fragaria x ananassa HOM05D003946 ORTHO05D004485 4.9e-06 55.8 120 29.2
Psat3g143400 Pisum sativum HOM05D003946 ORTHO05D004485 4.9e-06 55.8 132 29.5
TPR.G35554 Trifolium pratense HOM05D003946 ORTHO05D004485 4.9e-06 55.8 125 30.4
MSTRG.1445 Avicennia marina HOM05D005920 ORTHO05D007211 6.4e-06 55.5 136 26.5
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 6.4e-06 55.5 123 30.1
CsaV3_4G028740 Cucumis sativus L. HOM05D000868 ORTHO05D000711 6.4e-06 55.5 93 31.2


User provided reference genes

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