Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.6e-113 412.1 222 100.0
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.0e-64 250.8 220 62.7
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.2e-63 245.4 224 61.6
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.1e-58 228.8 221 57.5
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-54 217.2 225 56.4
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.4e-53 213.8 223 55.6
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.5e-52 208.0 224 56.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-50 203.8 225 52.9
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.8e-50 203.4 226 55.3
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.6e-49 200.3 232 53.4
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.8e-49 198.0 222 53.2
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.0e-48 197.6 219 56.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 2.3e-48 196.4 238 50.4
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 8.6e-48 194.5 229 51.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.5e-47 193.7 222 53.2
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.5e-47 193.0 226 50.9
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.6e-47 191.8 222 52.3
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 5.6e-47 191.8 224 50.9
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 7.3e-47 191.4 235 49.4
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 9.5e-47 191.0 227 51.1
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.6e-46 190.3 222 51.8
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.6e-46 190.3 222 52.3
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.7e-46 188.7 226 50.4
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.2e-46 188.3 200 56.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 8.0e-46 188.0 216 51.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.0e-45 187.6 221 49.8
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.4e-45 187.2 227 48.5
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.4e-45 187.2 228 52.2
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.0e-45 185.7 235 49.4
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 5.2e-45 185.3 203 52.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 6.8e-45 184.9 226 59.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.2e-44 184.1 223 50.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.2e-44 184.1 223 50.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.9e-43 179.5 227 47.1
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 4.9e-43 178.7 243 48.6
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.9e-43 178.7 229 48.5
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-42 177.6 229 48.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-42 177.2 223 48.9
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.4e-42 177.2 220 49.5
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-42 176.4 229 47.6
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 3.2e-42 176.0 223 49.3
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.2e-41 174.1 229 49.8
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.6e-41 172.2 226 50.9
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.0e-40 171.0 218 45.9
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.7e-40 170.2 206 46.6
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 6.6e-40 168.3 218 45.9
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.3e-39 165.6 228 43.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 5.6e-39 165.2 231 45.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 7.3e-39 164.9 221 47.5
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.6e-38 163.7 220 54.5
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.8e-38 162.9 228 44.7
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.6e-38 162.5 227 48.0
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.1e-38 161.4 240 45.0
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-37 161.0 224 51.3
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-37 160.2 218 43.6
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-37 159.8 228 43.4
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.2e-37 158.7 203 44.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.9e-37 157.9 225 47.1
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-36 157.5 194 51.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.4e-36 156.0 227 44.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 4.4e-36 155.6 220 43.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 4.4e-36 155.6 220 44.1
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.4e-36 155.6 223 44.8
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.4e-36 155.6 223 48.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 7.5e-36 154.8 262 42.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 9.8e-36 154.5 222 41.4
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 9.8e-36 154.5 221 45.7
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.7e-35 153.7 217 46.5
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.9e-35 152.9 223 42.6
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-35 152.5 223 42.6
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.9e-35 152.1 249 40.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 4.9e-35 152.1 221 45.2
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.4e-34 150.6 227 43.6
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.4e-34 150.6 227 42.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.4e-34 150.6 253 43.9
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.4e-34 150.6 236 44.1
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 2.4e-34 149.8 239 43.1
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 3.2e-34 149.4 210 46.7
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 3.2e-34 149.4 229 43.7
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.1e-34 149.1 199 45.2
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-33 146.7 220 47.3
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-33 146.7 220 47.3
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 4.6e-33 145.6 227 43.6
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 6.0e-33 145.2 212 44.3
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.0e-33 145.2 220 46.4
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.0e-32 144.4 231 42.0
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.3e-32 144.1 240 42.1
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.7e-32 143.7 232 40.5
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.7e-32 143.7 168 50.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.0e-32 142.9 219 43.4
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.5e-31 140.6 223 41.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.5e-31 140.6 208 43.3
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.9e-31 140.2 231 45.0
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 4.3e-31 139.0 240 37.9
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 4.3e-31 139.0 209 41.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.6e-31 138.7 223 41.7
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.3e-31 138.3 222 41.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 9.5e-31 137.9 239 37.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.6e-30 137.1 230 41.3
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-30 136.3 229 41.0
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-30 136.3 229 41.0
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.8e-30 136.3 229 41.0
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 2.8e-30 136.3 222 40.5
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 6.2e-30 135.2 222 41.0
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 6.2e-30 135.2 214 43.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 6.2e-30 135.2 225 44.4
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.4e-29 134.0 223 40.8
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-29 134.0 229 40.2
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.4e-29 134.0 229 40.2
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.8e-29 133.7 228 41.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.1e-29 132.9 230 43.0
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 4.0e-29 132.5 203 43.8
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.2e-28 131.0 222 42.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.0e-28 130.2 220 39.5
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-28 129.8 223 39.9
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.6e-28 129.8 223 39.9
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 5.8e-28 128.6 222 38.3
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 6.4e-27 125.2 223 38.1
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 6.4e-27 125.2 223 38.1
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 6.4e-27 125.2 223 38.1
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 6.4e-27 125.2 196 41.3
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-25 120.2 224 39.3
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.1e-25 120.2 245 39.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.7e-25 119.8 224 39.3
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 6.0e-25 118.6 218 37.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 7.8e-25 118.2 185 43.2
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.0e-24 117.9 200 44.0
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-24 117.1 224 38.8
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-24 117.1 224 38.8
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-24 117.1 224 38.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.7e-24 117.1 217 37.3
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.3e-24 116.7 226 38.5
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 5.1e-24 115.5 224 38.4
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 5.1e-24 115.5 217 36.4
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 4.3e-23 112.5 117 53.8
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 5.6e-23 112.1 189 35.4
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.6e-22 110.5 189 39.7
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.1e-22 110.2 218 35.8
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-21 107.5 189 39.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.8e-21 107.1 188 38.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.2e-20 104.4 222 34.2
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-20 104.0 221 37.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.4e-20 102.4 163 43.6
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.6e-20 101.7 190 35.8
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 9.9e-20 101.3 215 34.9
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.4e-19 98.6 189 35.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.2e-17 94.4 220 35.0
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.7e-17 93.2 210 31.9
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.6e-17 92.4 228 34.2
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 2.3e-16 90.1 245 32.7
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.7e-16 88.2 161 40.4
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.5e-15 87.4 130 41.5
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.3e-15 85.9 229 32.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 5.6e-15 85.5 102 46.1
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.1e-14 83.6 94 45.7
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.1e-14 83.6 116 43.1
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-13 80.9 126 43.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-13 80.5 129 41.9
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.0e-13 79.3 106 45.3
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 2.6e-12 76.6 60 56.7
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.9e-11 73.2 194 34.0
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.9e-11 73.2 215 31.6
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 4.9e-11 72.4 204 32.4
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 4.9e-11 72.4 204 32.4
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 6.4e-11 72.0 95 47.4
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.4e-10 70.9 198 32.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-10 70.9 198 32.3
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-10 70.5 198 31.8
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.6e-09 67.4 217 29.5
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 4.6e-09 65.9 95 43.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.3e-08 63.5 116 36.2


User provided reference genes

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