Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 5.6e-240 833.9 447 100.0
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 6.8e-137 491.5 440 58.2
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 6.4e-135 485.0 440 57.5
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 8.7e-124 448.0 392 60.7
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.1e-121 441.0 432 55.8
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 4.5e-120 435.6 435 54.0
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.9e-119 433.0 413 56.4
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.9e-115 420.2 439 52.2
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.3e-115 419.5 439 52.6
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 3.7e-114 416.0 432 53.0
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.0e-113 412.5 424 54.7
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.9e-111 406.4 437 53.5
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.9e-110 403.7 433 51.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 2.1e-109 400.2 436 50.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 2.7e-109 399.8 442 50.2
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 1.0e-108 397.9 436 50.9
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 7.4e-107 391.7 437 50.6
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 8.2e-106 388.3 439 50.6
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 9.0e-105 384.8 442 47.1
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 2.6e-104 383.3 437 50.6
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 7.6e-104 381.7 433 49.2
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 6.5e-103 378.6 433 49.9
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 7.1e-102 375.2 375 54.7
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 1.2e-101 374.4 537 43.0
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.2e-101 374.4 432 48.6
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 4.6e-101 372.5 437 47.8
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 7.9e-101 371.7 438 46.3
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-100 370.2 436 47.2
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.9e-100 369.4 440 49.8
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 8.7e-100 368.2 430 48.6
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.1e-99 367.9 441 45.8
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.5e-99 367.5 439 45.6
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.9e-99 367.1 432 48.6
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 2.5e-99 366.7 426 48.4
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 3.3e-99 366.3 473 46.3
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 9.7e-99 364.8 447 47.0
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 8.2e-98 361.7 439 47.2
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 1.8e-97 360.5 372 53.8
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.8e-97 360.5 432 47.7
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 1.8e-97 360.5 473 44.4
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 5.3e-97 359.0 437 46.2
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 6.9e-97 358.6 439 45.6
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.6e-96 356.7 436 46.1
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 3.4e-96 356.3 442 47.3
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 4.5e-96 355.9 436 45.9
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.7e-95 354.0 440 44.8
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 6.5e-95 352.1 436 45.0
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 1.1e-94 351.3 423 46.8
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.5e-94 350.1 423 46.6
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 3.2e-94 349.7 436 44.7
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 6.1e-93 345.5 439 46.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 7.9e-93 345.1 443 46.7
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 1.8e-92 344.0 439 43.3
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 6.7e-92 342.0 441 44.7
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 6.7e-92 342.0 439 45.6
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.3e-91 339.7 433 46.7
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.3e-91 339.7 323 58.2
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 5.7e-91 339.0 448 43.3
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 5.7e-91 339.0 439 44.4
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.7e-90 336.3 458 42.4
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 8.2e-90 335.1 449 43.9
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.1e-89 334.7 436 45.4
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.4e-89 334.3 442 44.3
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 2.6e-88 330.1 458 43.0
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 2.6e-88 330.1 458 43.0
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.6e-88 330.1 463 41.9
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.3e-87 327.8 458 42.8
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.7e-87 327.4 442 44.3
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 2.9e-87 326.6 439 45.3
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 6.5e-87 325.5 439 43.5
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.1e-85 320.5 439 43.1
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.1e-85 320.5 442 45.2
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 4.7e-85 319.3 497 39.6
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.5e-83 314.3 438 41.3
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.5e-83 314.3 441 42.6
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.5e-83 314.3 432 43.1
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.0e-83 313.9 391 52.4
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.0e-83 313.9 439 42.8
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 3.3e-83 313.2 388 45.9
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 5.7e-83 312.4 442 45.5
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.4e-81 307.8 450 44.0
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 3.1e-81 306.6 368 47.6
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 3.1e-81 306.6 591 35.9
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 4.1e-81 306.2 432 42.6
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 5.3e-81 305.8 442 41.6
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 1.2e-80 304.7 437 41.9
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.5e-80 304.3 433 43.2
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.6e-80 303.5 414 44.9
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 2.6e-80 303.5 440 43.2
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.5e-80 302.8 441 41.0
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.3e-79 301.2 431 42.9
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.9e-79 300.1 302 53.3
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.9e-79 300.1 431 42.9
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 5.0e-79 299.3 443 40.6
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 6.5e-79 298.9 441 43.1
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 3.2e-78 296.6 440 42.3
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 7.2e-78 295.4 428 41.1
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.6e-77 293.1 443 40.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.0e-76 291.6 351 49.9
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 4.4e-75 286.2 464 38.1
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 4.4e-75 286.2 433 41.3
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.7e-74 284.3 423 40.4
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.4e-73 280.4 440 40.2
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.5e-71 271.9 414 41.3
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 4.2e-70 269.6 458 38.9
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 7.2e-70 268.9 346 44.8
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.7e-69 266.9 405 42.5
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 2.3e-68 263.8 328 44.8
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 8.8e-68 261.9 348 45.1
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.0e-67 260.8 246 54.1
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 5.7e-67 259.2 447 37.6
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 3.2e-62 243.4 444 38.5
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 4.2e-62 243.0 447 35.6
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 9.4e-62 241.9 428 39.5
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.5e-59 234.6 461 36.4
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 7.5e-59 232.3 286 46.5
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 3.5e-56 223.4 309 43.7
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 5.0e-55 219.5 336 41.1
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.4e-52 211.5 436 34.6
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.7e-50 203.4 604 28.6
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-47 195.3 281 41.6
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.7e-47 194.5 253 45.5
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 3.9e-47 193.4 219 46.1
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.5e-46 191.4 221 52.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.7e-40 170.6 410 33.2
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 2.5e-38 164.1 174 54.6
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 5.6e-38 162.9 205 40.0
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 4.7e-37 159.8 442 30.5
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 6.8e-36 156.0 216 45.8
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 2.9e-34 150.6 411 28.2
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 1.6e-32 144.8 205 39.5
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.0e-31 142.1 153 51.0
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.4e-28 131.7 136 48.5
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 8.9e-28 129.0 341 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 3.5e-24 117.1 249 32.1
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-23 115.5 159 42.1
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.1e-20 105.5 140 46.4
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 5.2e-20 103.2 115 53.0
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 8.9e-20 102.4 157 39.5
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.4e-18 95.9 98 53.1
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.1e-17 95.5 128 46.1
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 3.5e-16 90.5 180 34.4
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 5.1e-15 86.7 81 58.0
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 4.3e-14 83.6 96 39.6
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 1.8e-12 78.2 74 56.8
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 9.9e-11 72.4 78 43.6
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.9e-11 72.4 403 26.1
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 3.2e-09 67.4 440 21.8
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-07 61.6 109 37.6
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-07 61.6 66 51.5
MBI08_g15045_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 3.9e-07 60.5 120 42.5
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 1.5e-06 58.5 145 25.5
Actinidia39035 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.9e-06 58.2 60 53.3


User provided reference genes

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