Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.5e-62 243.8 274 100.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.1e-44 184.5 275 72.4
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.2e-44 182.6 278 75.2
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.0e-39 166.0 276 71.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.0e-39 164.9 278 60.1
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 4.5e-38 162.5 278 74.5
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.6e-32 144.1 204 71.6
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.8e-32 142.5 276 62.0
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 4.8e-32 142.5 274 73.0
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 4.0e-31 139.4 203 75.4
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 1.2e-30 137.9 281 61.2
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.5e-30 137.5 281 75.1
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 7.6e-30 135.2 204 76.0
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.3e-29 134.4 203 72.4
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 1.7e-29 134.0 201 77.1
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.8e-29 132.9 278 65.5
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 4.9e-29 132.5 204 76.0
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 8.4e-29 131.7 274 73.0
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 2.5e-28 130.2 279 69.9
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 1.2e-27 127.9 265 78.1
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-27 127.9 279 64.5
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 2.1e-27 127.1 205 74.6
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.6e-27 125.9 204 73.5
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.3e-26 124.4 272 54.4
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.8e-26 124.0 203 71.9
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.8e-26 124.0 279 62.7
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.8e-26 124.0 201 57.7
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 2.3e-26 123.6 204 66.7
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.3e-26 123.6 201 75.1
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 2.3e-26 123.6 194 76.3
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 3.0e-26 123.2 279 69.2
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 3.9e-26 122.9 204 74.0
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 5.1e-26 122.5 278 69.4
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 6.7e-26 122.1 278 60.1
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 8.7e-26 121.7 279 57.7
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.1e-25 121.3 186 61.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.5e-25 120.9 204 67.2
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 1.9e-25 120.6 281 65.8
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.9e-25 120.6 193 56.0
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.9e-25 120.6 193 70.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 5.7e-25 119.0 279 63.8
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 5.7e-25 119.0 278 73.7
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.3e-24 117.9 276 59.8
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 3.7e-24 116.3 204 72.1
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 3.7e-24 116.3 203 74.9
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 4.8e-24 115.9 202 66.8
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 2.4e-23 113.6 162 79.6
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 2.4e-23 113.6 277 63.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 3.1e-23 113.2 279 64.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.3e-23 112.5 201 64.7
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 5.3e-23 112.5 224 63.4
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 9.0e-23 111.7 280 60.0
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.0e-23 111.7 204 74.0
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.2e-22 111.3 204 59.3
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.2e-22 111.3 170 70.0
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 5.9e-22 109.0 164 62.2
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.0e-21 108.2 191 65.4
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 1.3e-21 107.8 280 65.0
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.7e-21 107.5 276 67.8
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.7e-21 107.5 204 52.0
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 2.2e-21 107.1 271 65.7
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 2.2e-21 107.1 201 65.2
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 3.8e-21 106.3 194 71.6
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 5.0e-21 105.9 201 68.7
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 5.0e-21 105.9 200 70.0
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 8.5e-21 105.1 276 54.0
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.5e-20 103.6 272 46.0
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.2e-20 103.2 273 65.9
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 3.2e-20 103.2 204 56.4
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 4.2e-20 102.8 212 59.0
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 5.5e-20 102.4 205 62.9
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 9.3e-20 101.7 205 67.8
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 9.3e-20 101.7 200 70.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 2.1e-19 100.5 163 71.8
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 2.1e-19 100.5 193 68.4
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.7e-19 100.1 197 71.1
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 3.6e-19 99.8 162 81.5
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 6.1e-19 99.0 206 71.8
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.0e-18 98.2 212 58.0
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 1.8e-18 97.4 205 69.8
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 3.0e-18 96.7 187 55.6
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 3.9e-18 96.3 90 77.8
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.9e-18 96.3 164 62.2
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 6.7e-18 95.5 166 68.1
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 8.8e-18 95.1 217 62.7
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 1.1e-17 94.7 212 60.4
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.1e-17 94.7 161 70.8
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.5e-17 94.4 159 65.4
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.3e-17 93.2 184 66.3
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.3e-17 93.2 135 49.6
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 3.3e-17 93.2 195 57.9
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.3e-17 92.8 165 66.1
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 9.7e-17 91.7 212 64.6
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 9.7e-17 91.7 163 65.6
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 9.7e-17 91.7 163 65.6
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 9.7e-17 91.7 187 66.3
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.3e-16 91.3 159 81.8
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 1.3e-16 91.3 164 72.0
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 2.8e-16 90.1 205 67.3
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 3.7e-16 89.7 271 60.1
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 6.3e-16 89.0 159 79.9
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 6.3e-16 89.0 176 62.5
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 8.2e-16 88.6 172 67.4
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 8.2e-16 88.6 283 62.5
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 1.4e-15 87.8 205 69.3
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.4e-15 87.8 205 69.3
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.4e-15 87.8 205 69.3
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.4e-15 87.8 195 60.0
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.4e-15 87.8 199 70.9
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.8e-15 87.4 194 52.6
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 1.8e-15 87.4 182 65.9
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.8e-15 87.4 279 55.6
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.8e-15 87.4 186 64.0
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.1e-15 86.7 159 75.5
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 5.3e-15 85.9 77 81.8
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 5.3e-15 85.9 102 55.9
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 6.9e-15 85.5 278 62.2
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 9.1e-15 85.1 199 61.8
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 2.0e-14 84.0 118 55.1
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 2.6e-14 83.6 194 52.1
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 3.4e-14 83.2 204 61.3
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.4e-14 83.2 175 54.9
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 5.9e-14 82.4 74 62.2
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 5.9e-14 82.4 134 76.1
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 7.7e-14 82.0 197 68.0
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 7.7e-14 82.0 167 67.1
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.7e-14 82.0 166 68.7
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.0e-13 81.6 160 69.4
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.0e-13 81.6 149 71.8
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 1.0e-13 81.6 78 62.8
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.7e-13 80.9 183 65.6
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 2.2e-13 80.5 196 54.6
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.2e-13 80.5 205 67.8
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.2e-13 80.5 195 59.0
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.2e-13 80.5 203 66.0
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 5.0e-13 79.3 100 62.0
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 6.5e-13 79.0 74 62.2
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 8.5e-13 78.6 78 74.4
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 1.9e-12 77.4 189 63.5
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 4.2e-12 76.3 190 55.8
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 5.5e-12 75.9 212 57.1
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 5.5e-12 75.9 281 61.9
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 5.5e-12 75.9 195 57.4
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 5.5e-12 75.9 220 49.5
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 7.2e-12 75.5 84 57.1
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.6e-11 74.3 194 67.5
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.7e-11 73.6 176 66.5
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 4.7e-11 72.8 69 63.8
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 4.7e-11 72.8 103 61.2
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 4.7e-11 72.8 105 48.6
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 6.1e-11 72.4 203 58.6
SalBow5G2549 Salvia bowleyana HOM05D003347 ORTHO05D003821 7.9e-11 72.0 184 65.2
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 7.9e-11 72.0 129 49.6
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.4e-10 71.2 101 61.4
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.4e-10 71.2 176 48.9
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 2.3e-10 70.5 116 56.9
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 3.0e-10 70.1 47 78.7
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 5.1e-10 69.3 101 59.4
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 1.1e-09 68.2 224 56.2
SEGI_27842 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.1e-09 68.2 167 70.1
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 4.4e-09 66.2 161 50.9
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 4.4e-09 66.2 44 75.0
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 7.4e-09 65.5 110 46.4
MSTRG.5229 Avicennia marina HOM05D003347 ORTHO05D003821 9.7e-09 65.1 198 62.6
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 1.3e-08 64.7 238 44.5
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 1.3e-08 64.7 70 72.9
Actinidia06603 Actinidia chinensis HOM05D003347 ORTHO05D003821 1.7e-08 64.3 263 62.4
AagrBONN_evm.TU.Sc2ySwM_228.2461 Anthoceros agrestis HOM05D003347 ORTHO05D003821 2.2e-08 63.9 163 68.7
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.2e-08 63.9 116 66.4
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.2e-08 63.9 231 51.5
Sabra01G0163000 Salix brachista HOM05D003347 ORTHO05D003821 2.2e-08 63.9 163 72.4
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.7e-08 63.2 94 60.6
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 3.7e-08 63.2 71 57.7
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 6.3e-08 62.4 134 57.5
THA.LOC104819474 Tarenaya hassleriana HOM05D012923 ORTHO05D014747 6.3e-08 62.4 201 62.2
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 1.1e-07 61.6 104 44.2
Peaxi162Scf00006g00507 Petunia axillaris HOM05D003347 ORTHO05D003821 2.4e-07 60.5 91 60.4
ClCG02G000100 Citrullus lanatus HOM05D003347 ORTHO05D003821 4.1e-07 59.7 38 84.2
SHI11423 Sapria himalayana HOM05D003347 ORTHO05D003821 4.1e-07 59.7 76 60.5
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 6.9e-07 58.9 194 56.2
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.5e-06 57.8 196 56.1
AL6G23960 Arabidopsis lyrata HOM05D012923 ORTHO05D014747 1.5e-06 57.8 185 65.4
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 4.5e-06 56.2 77 48.1
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 5.9e-06 55.8 72 45.8
AT5G13340 Arabidopsis thaliana HOM05D012923 ORTHO05D014747 7.7e-06 55.5 278 50.0
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 7.7e-06 55.5 91 50.5


User provided reference genes

Program Settings