Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.8e-74 282.0 152 100.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 4.8e-50 201.4 152 73.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 5.3e-49 198.0 152 70.4
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 6.9e-49 197.6 152 69.7
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.9e-48 194.5 152 69.7
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 1.0e-47 193.7 152 70.4
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.7e-47 193.0 152 70.4
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.9e-47 192.2 152 69.7
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 8.5e-47 190.7 152 69.1
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.4e-46 189.9 152 67.8
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 1.4e-46 189.9 152 67.1
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.9e-46 189.5 152 65.1
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.9e-46 189.5 152 68.4
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.2e-46 188.7 152 69.1
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 4.2e-46 188.3 146 67.8
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 5.5e-46 188.0 152 67.1
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 9.4e-46 187.2 151 68.2
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.2e-45 186.8 152 65.8
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.1e-45 186.0 142 71.8
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.7e-45 185.7 152 66.4
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 6.1e-45 184.5 152 65.1
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.1e-45 184.5 152 67.8
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.9e-45 184.1 148 65.5
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.8e-44 183.0 152 65.1
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.3e-44 182.6 143 66.4
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-44 182.6 152 67.1
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.3e-44 182.6 152 67.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 3.0e-44 182.2 152 65.8
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 5.2e-44 181.4 140 67.9
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 8.8e-44 180.6 152 63.2
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 8.8e-44 180.6 152 64.5
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.8e-44 180.6 152 65.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.1e-43 180.3 152 63.2
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.1e-43 180.3 152 65.1
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.0e-43 179.5 143 65.0
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 2.6e-43 179.1 152 63.2
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 3.3e-43 178.7 152 64.5
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 3.3e-43 178.7 152 63.8
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.4e-43 178.3 143 65.0
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 7.4e-43 177.6 152 62.5
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.7e-42 176.4 152 66.4
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 2.8e-42 175.6 152 63.8
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.7e-42 175.3 152 64.5
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.4e-41 172.6 143 65.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.1e-41 172.2 153 64.7
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 9.1e-41 170.6 147 62.6
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 9.1e-41 170.6 138 67.4
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.6e-40 169.1 152 61.2
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.0e-39 167.2 152 59.9
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.8e-39 165.2 148 61.5
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 5.0e-39 164.9 152 60.5
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.9e-38 162.9 153 60.8
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.5e-38 162.5 152 58.6
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.5e-38 162.5 153 60.8
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 5.5e-38 161.4 153 60.1
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 9.4e-38 160.6 152 59.2
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.2e-37 160.2 152 59.9
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.6e-37 159.8 152 61.2
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 4.7e-37 158.3 144 60.4
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.0e-36 157.1 152 57.2
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 4.0e-36 155.2 132 63.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 4.0e-36 155.2 152 60.5
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.2e-36 154.8 153 60.1
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.7e-36 154.5 152 61.2
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 8.8e-36 154.1 152 57.2
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.5e-35 153.3 148 56.8
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-35 152.9 121 66.1
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.0e-35 152.9 157 59.2
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 3.3e-35 152.1 152 57.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.7e-35 151.4 152 59.9
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.4e-33 146.7 152 51.3
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.3e-33 144.8 124 64.5
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 9.1e-33 144.1 123 63.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-32 143.3 153 56.2
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.6e-32 143.3 153 56.2
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-32 142.9 123 63.4
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-32 142.9 123 63.4
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.5e-32 142.1 153 55.6
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.9e-32 141.4 138 58.7
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 1.0e-31 140.6 119 62.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.0e-31 140.6 152 58.6
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.3e-31 140.2 153 57.5
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.7e-31 139.8 152 53.9
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.2e-31 139.4 114 64.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.9e-31 139.0 114 64.0
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.9e-31 139.0 122 62.3
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.8e-31 138.7 152 53.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.0e-31 138.3 144 56.2
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 6.5e-31 137.9 152 53.3
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-30 136.3 117 62.4
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.5e-30 134.8 118 59.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.1e-29 132.9 152 54.6
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 8.0e-29 131.0 132 56.1
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.0e-29 131.0 152 50.0
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 8.0e-29 131.0 152 50.0
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 8.0e-29 131.0 152 51.3
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.4e-28 130.2 152 49.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.3e-28 129.4 152 50.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.3e-28 129.4 152 49.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 6.8e-28 127.9 152 48.7
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 8.8e-28 127.5 153 49.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 7.5e-27 124.4 152 48.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 7.5e-27 124.4 152 48.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 9.8e-27 124.0 152 47.4
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.7e-26 123.2 112 56.2
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-26 122.5 125 55.2
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 46.7
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 46.7
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 46.7
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 46.7
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 46.7
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 46.7
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 2.8e-26 122.5 152 48.0
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 5.4e-25 118.2 152 46.1
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.2e-24 117.1 153 46.4
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.6e-24 116.7 110 55.5
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-20 103.2 79 65.8
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.8e-18 95.9 123 48.8
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.8e-15 85.5 103 48.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 3.8e-15 85.5 90 55.6
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.1e-14 84.0 103 48.5
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.1e-14 84.0 91 51.6
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 2.5e-14 82.8 94 55.3
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.2e-13 80.5 79 57.0
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.2e-13 80.5 90 48.9
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.3e-12 76.3 62 64.5
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.3e-12 76.3 94 48.9
ATR0794G127 Amborella trichopoda HOM05D005880 ORTHO05D007114 6.8e-12 74.7 130 39.2
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.4e-11 72.4 54 64.8
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.4e-09 65.1 92 43.5
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 5.4e-09 65.1 94 48.9
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 5.4e-09 65.1 136 36.0
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-07 59.7 147 40.1
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.3e-07 59.7 147 40.1


User provided reference genes

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