Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00097 Aquilegia oxysepala HOM05D009671 ORTHO05D011859 1.3e-67 259.6 135 100.0
MBI06_g17234_MAGBIO Magnolia biondii HOM05D009671 ORTHO05D011859 3.1e-32 142.1 132 62.1
PSO782G1016 Papaver somniferum HOM05D009671 ORTHO05D011859 3.8e-30 135.2 142 55.6
Ah.05g178420 Amaranthus hybridus HOM05D009671 ORTHO05D011859 3.2e-29 132.1 132 57.6
EL10Ac1g00117 Beta vulgaris HOM05D009671 ORTHO05D011859 2.1e-28 129.4 134 56.0
Sc23g0001430 Simmondsia chinensis HOM05D009671 ORTHO05D011859 1.0e-27 127.1 132 51.5
AUR62004618 Chenopodium quinoa HOM05D009671 ORTHO05D011859 1.5e-26 123.2 103 65.0
Hund16784 Selenicereus undatus HOM05D009671 ORTHO05D003854 5.6e-26 121.3 86 68.6
CDE02G4762 Ceratophyllum demersum HOM05D009671 ORTHO05D011859 1.6e-25 119.8 106 63.2
Thecc.08G187900 Theobroma cacao HOM05D009671 ORTHO05D011859 2.6e-23 112.5 97 59.8
CDE08G1624 Ceratophyllum demersum HOM05D009671 ORTHO05D011859 7.6e-23 110.9 105 60.0
PSO170G1327 Papaver somniferum HOM05D009671 ORTHO05D011859 4.9e-22 108.2 101 53.5
AT1G72070 Arabidopsis thaliana HOM05D009671 ORTHO05D011859 1.3e-17 93.6 111 58.6
AL2G31690 Arabidopsis lyrata HOM05D009671 ORTHO05D011859 2.1e-17 92.8 112 57.1
CARHR064890 Cardamine hirsuta HOM05D009671 ORTHO05D011859 4.0e-16 88.6 106 57.5
BolC6t39675H Brassica oleracea HOM05D009671 ORTHO05D011859 3.4e-15 85.5 106 58.5
BraA07t31388Z Brassica rapa HOM05D009671 ORTHO05D011859 9.9e-15 84.0 106 57.5
BcaB03g14934 Brassica carinata HOM05D009671 ORTHO05D011859 1.7e-14 83.2 109 57.8
C06p46300 Brassica napus HOM05D009671 ORTHO05D011859 1.7e-14 83.2 106 57.5
A07p38220 Brassica napus HOM05D009671 ORTHO05D011859 2.9e-14 82.4 94 59.6
Carub.0002s1885 Capsella rubella HOM05D009671 ORTHO05D011859 2.9e-14 82.4 112 54.5
BcaC08g46659 Brassica carinata HOM05D009671 ORTHO05D011859 6.4e-14 81.3 95 58.9
THA.LOC104800125 Tarenaya hassleriana HOM05D009671 ORTHO05D011859 8.4e-14 80.9 115 53.9
AagrBONN_evm.TU.Sc2ySwM_228.3743 Anthoceros agrestis HOM05D003458 ORTHO05D003854 3.5e-12 75.5 109 38.5
AUR62022643 Chenopodium quinoa HOM05D009671 ORTHO05D011859 1.0e-11 73.9 133 43.6
AagrBONN_evm.TU.Sc2ySwM_228.3720 Anthoceros agrestis HOM05D003458 ORTHO05D003854 5.1e-11 71.6 98 39.8
SEGI_25751 Sequoiadendron giganteum HOM05D003458 ORTHO05D003854 5.1e-11 71.6 94 43.6
BcaB03g15029 Brassica carinata HOM05D009671 ORTHO05D011859 1.9e-10 69.7 103 54.4
BcaC08g46736 Brassica carinata HOM05D009671 ORTHO05D011859 2.8e-09 65.9 101 53.5
TAR625G0694 Trochodendron aralioides HOM05D003458 ORTHO05D003854 4.0e-08 62.0 132 32.6
Cc01_g13280 Coffea canephora HOM05D006731 ORTHO05D007597 5.3e-08 61.6 98 38.8
HPP92_014300 Vanilla planifolia HOM05D006731 ORTHO05D007597 5.3e-08 61.6 70 47.1
QL01p030432 Quercus lobata HOM05D006731 ORTHO05D007597 6.9e-08 61.2 74 44.6
Mapoly0004s0037 Marchantia polymorpha HOM05D003458 ORTHO05D003854 9.0e-08 60.8 59 47.5
CANSAT54G1841 Cannabis sativa HOM05D006731 ORTHO05D007597 1.2e-07 60.5 79 41.8
FAN21G1195 Fragaria x ananassa HOM05D006731 ORTHO05D007597 1.2e-07 60.5 87 41.4
Lsat_1_v5_gn_1_30900 Lactuca sativa HOM05D003458 ORTHO05D003854 1.2e-07 60.5 140 31.4
CSS0040627 Camellia sinensis var. sinensis HOM05D006731 ORTHO05D007597 1.5e-07 60.1 73 46.6
DCAR_017051 Daucus carota HOM05D007032 ORTHO05D008777 2.6e-07 59.3 67 46.3
PSO017G5603 Papaver somniferum HOM05D003458 ORTHO05D003854 2.6e-07 59.3 93 36.6
Solyc06g068500.3 Solanum lycopersicum HOM05D003458 ORTHO05D003854 2.6e-07 59.3 107 32.7
CAN.G1932.6 Capsicum annuum HOM05D003458 ORTHO05D003854 3.4e-07 58.9 107 35.5
HanXRQChr02g0034051 Helianthus annuus HOM05D003458 ORTHO05D003854 3.4e-07 58.9 105 37.1
BcaB03g14940 Brassica carinata HOM05D009671 ORTHO05D011859 4.5e-07 58.5 109 48.6
ECA232G4261 Erigeron canadensis HOM05D003458 ORTHO05D003854 4.5e-07 58.5 82 40.2
FvH4_3g36901 Fragaria vesca HOM05D006731 ORTHO05D007597 4.5e-07 58.5 87 40.2
FAN16G0219 Fragaria x ananassa HOM05D006731 ORTHO05D007597 4.5e-07 58.5 87 40.2
MBI14_g09104_MAGBIO Magnolia biondii HOM05D003458 ORTHO05D003854 4.5e-07 58.5 97 37.1
Medtr2g097690 Medicago truncatula HOM05D006731 ORTHO05D007597 4.5e-07 58.5 54 55.6
RcHm_v2.0_Chr5g0066291 Rosa chinensis HOM05D006731 ORTHO05D007597 4.5e-07 58.5 87 40.2
CiPaw.01G255600 Carya illinoinensis HOM05D003458 ORTHO05D003854 5.8e-07 58.2 117 31.6
CiPaw.13G090200 Carya illinoinensis HOM05D006731 ORTHO05D007597 5.8e-07 58.2 102 39.2
FAN25G0500 Fragaria x ananassa HOM05D006731 ORTHO05D007597 5.8e-07 58.2 81 42.0
MSTRG.11188 Avicennia marina HOM05D003458 ORTHO05D003854 7.6e-07 57.8 77 40.3
Cpa.g.sc81.105 Carica papaya HOM05D006731 ORTHO05D007597 7.6e-07 57.8 55 52.7
Cfa011546 Carpinus fangiana HOM05D006731 ORTHO05D007597 7.6e-07 57.8 75 44.0
Sopen06g025750 Solanum pennellii HOM05D003458 ORTHO05D003854 7.6e-07 57.8 107 31.8
DCAR_007433 Daucus carota HOM05D000810 ORTHO05D001064 1.0e-06 57.4 78 42.3
FAN14G3070 Fragaria x ananassa HOM05D003458 ORTHO05D003854 1.0e-06 57.4 152 29.6
PSO063G6005 Papaver somniferum HOM05D003458 ORTHO05D003854 1.0e-06 57.4 75 42.7
RcHm_v2.0_Chr2g0132701 Rosa chinensis HOM05D003458 ORTHO05D003854 1.0e-06 57.4 124 32.3
Sc06g0008350 Simmondsia chinensis HOM05D006731 ORTHO05D007597 1.0e-06 57.4 110 38.2
PGSC0003DMG400028488 Solanum tuberosum HOM05D003458 ORTHO05D003854 1.0e-06 57.4 156 26.9
FAN02G0674 Fragaria x ananassa HOM05D003458 ORTHO05D003854 1.3e-06 57.0 107 33.6
Psat5g118720 Pisum sativum HOM05D006731 ORTHO05D007597 1.3e-06 57.0 63 49.2
TPR.G6895 Trifolium pratense HOM05D006731 ORTHO05D007597 1.3e-06 57.0 66 47.0
EL10Ac7g16058 Beta vulgaris HOM05D006731 ORTHO05D007597 1.7e-06 56.6 65 44.6
CSS0014583 Camellia sinensis var. sinensis HOM05D003458 ORTHO05D003854 1.7e-06 56.6 127 30.7
Ca_01310_v3 Cicer arietinum L. HOM05D006731 ORTHO05D007597 1.7e-06 56.6 54 53.7
FvH4_6g28480 Fragaria vesca HOM05D003458 ORTHO05D003854 1.7e-06 56.6 107 33.6
Glyma.15G035700 Glycine max HOM05D006731 ORTHO05D007597 1.7e-06 56.6 87 37.9
Peaxi162Scf00207g00438 Petunia axillaris HOM05D003458 ORTHO05D003854 1.7e-06 56.6 118 30.5
PGR119G1845 Punica granatum HOM05D006731 ORTHO05D007597 1.7e-06 56.6 69 43.5
SMO119G0081 Selaginella moellendorffii HOM05D003458 ORTHO05D003854 1.7e-06 56.6 53 52.8
SEGI_18156 Sequoiadendron giganteum HOM05D006731 ORTHO05D007597 1.7e-06 56.6 55 49.1
TAR636G1057 Trochodendron aralioides HOM05D003458 ORTHO05D003854 1.7e-06 56.6 117 31.6
unitig_61.g26225 Utricularia gibba HOM05D003458 ORTHO05D003854 1.7e-06 56.6 104 34.6
Zm00001eb062810 Zea mays HOM05D006731 ORTHO05D007597 1.7e-06 56.6 54 53.7
Ah.01g016990 Amaranthus hybridus HOM05D003458 ORTHO05D003854 2.2e-06 56.2 100 39.0
Cpa.g.sc362.2 Carica papaya HOM05D003458 ORTHO05D003854 2.2e-06 56.2 109 34.9
CDE02G3149 Ceratophyllum demersum HOM05D003458 ORTHO05D003854 2.2e-06 56.2 91 38.5
AUR62025872 Chenopodium quinoa HOM05D003458 ORTHO05D003854 2.2e-06 56.2 74 40.5
Cc04_g05210 Coffea canephora HOM05D003458 ORTHO05D003854 2.2e-06 56.2 78 38.5
CsaV3_3G032720 Cucumis sativus L. HOM05D003458 ORTHO05D003854 2.2e-06 56.2 113 32.7
PSO339G2173 Papaver somniferum HOM05D007032 ORTHO05D008777 2.2e-06 56.2 70 47.1
SalBow6G0594 Salvia bowleyana HOM05D006731 ORTHO05D007597 2.2e-06 56.2 64 46.9
GSVIVG01015991001 Vitis vinifera HOM05D003458 ORTHO05D003854 2.2e-06 56.2 122 33.6
CDE04G0124 Ceratophyllum demersum HOM05D003458 ORTHO05D003854 2.9e-06 55.8 76 42.1
AUR62029843 Chenopodium quinoa HOM05D003458 ORTHO05D003854 2.9e-06 55.8 70 41.4
FAN05G3986 Fragaria x ananassa HOM05D003458 ORTHO05D003854 2.9e-06 55.8 136 30.9
MD09G1225800 Malus domestica HOM05D003458 ORTHO05D003854 2.9e-06 55.8 108 33.3
Oeu014965.1 Olea europaea HOM05D005011 ORTHO05D006443 2.9e-06 55.8 95 38.9
Pp3c22_22070 Physcomitrium patens HOM05D003458 ORTHO05D003854 2.9e-06 55.8 74 40.5
Sp6g21300 Schrenkiella parvula HOM05D006731 ORTHO05D007597 2.9e-06 55.8 54 50.0
Sed0025751 Sechium edule HOM05D000367 ORTHO05D001438 2.9e-06 55.8 58 50.0
THA.LOC104810758 Tarenaya hassleriana HOM05D006731 ORTHO05D007597 2.9e-06 55.8 105 36.2
Aa31LG1G11940 Aethionema arabicum HOM05D006731 ORTHO05D007597 3.8e-06 55.5 63 47.6
AT5G59610 Arabidopsis thaliana HOM05D006731 ORTHO05D007597 3.8e-06 55.5 57 49.1
BcaC03g14000 Brassica carinata HOM05D006731 ORTHO05D007597 3.8e-06 55.5 57 50.9
A02p07040 Brassica napus HOM05D006731 ORTHO05D007597 3.8e-06 55.5 57 50.9
A10p16800 Brassica napus HOM05D006731 ORTHO05D007597 3.8e-06 55.5 54 53.7
C02p12390 Brassica napus HOM05D006731 ORTHO05D007597 3.8e-06 55.5 57 50.9
BolC2t07339H Brassica oleracea HOM05D006731 ORTHO05D007597 3.8e-06 55.5 57 50.9
BraA02t05784Z Brassica rapa HOM05D006731 ORTHO05D007597 3.8e-06 55.5 57 50.9
Carub.0008s2028 Capsella rubella HOM05D006731 ORTHO05D007597 3.8e-06 55.5 54 51.9
CBR_g23776 Chara braunii HOM05D000367 ORTHO05D001438 3.8e-06 55.5 58 50.0
Ciclev10028974m.g Citrus clementina HOM05D006731 ORTHO05D007597 3.8e-06 55.5 74 41.9
Dinv24179 Davidia involucrata HOM05D000367 ORTHO05D001438 3.8e-06 55.5 58 50.0
Glyma.13G338600 Glycine max HOM05D006731 ORTHO05D007597 3.8e-06 55.5 91 36.3
Gohir.D05G119000 Gossypium hirsutum HOM05D003458 ORTHO05D003854 3.8e-06 55.5 150 28.7
Gorai.009G122900 Gossypium raimondii HOM05D003458 ORTHO05D003854 3.8e-06 55.5 150 28.7
MD03G1086600 Malus domestica HOM05D006731 ORTHO05D007597 3.8e-06 55.5 70 44.3
MD11G1095700 Malus domestica HOM05D006731 ORTHO05D007597 3.8e-06 55.5 70 44.3
Nn2g11181 Nelumbo nucifera HOM05D006731 ORTHO05D007597 3.8e-06 55.5 70 42.9
Pp3c4_26000 Physcomitrium patens HOM05D003458 ORTHO05D003854 3.8e-06 55.5 118 36.4
Prupe.6G071200 Prunus persica HOM05D006731 ORTHO05D007597 3.8e-06 55.5 70 44.3
Solyc03g117590.3 Solanum lycopersicum HOM05D003458 ORTHO05D003854 3.8e-06 55.5 113 31.9
Sopen03g036500 Solanum pennellii HOM05D003458 ORTHO05D003854 3.8e-06 55.5 113 31.9
BcaC04g19752 Brassica carinata HOM05D006731 ORTHO05D007597 4.9e-06 55.1 54 51.9
C09p51980 Brassica napus HOM05D006731 ORTHO05D007597 4.9e-06 55.1 54 51.9
BolC9t58060H Brassica oleracea HOM05D006731 ORTHO05D007597 4.9e-06 55.1 54 51.9
CSS0032159 Camellia sinensis var. sinensis HOM05D007032 ORTHO05D008777 4.9e-06 55.1 57 50.9
COL.COLO4_26747 Corchorus olitorius HOM05D003458 ORTHO05D003854 4.9e-06 55.1 108 35.2
MELO3C025893.2 Cucumis melo HOM05D006731 ORTHO05D007597 4.9e-06 55.1 54 50.0
CsaV3_3G032730 Cucumis sativus L. HOM05D003458 ORTHO05D003854 4.9e-06 55.1 114 32.5
ECA247G0576 Erigeron canadensis HOM05D006731 ORTHO05D007597 4.9e-06 55.1 74 40.5
Lj3g0022316 Lotus japonicus HOM05D006731 ORTHO05D007597 4.9e-06 55.1 54 51.9
Manes.14G168300 Manihot esculenta HOM05D000367 ORTHO05D001438 4.9e-06 55.1 70 40.0
PSO781G0091 Papaver somniferum HOM05D000367 ORTHO05D001438 4.9e-06 55.1 58 50.0
Rhsim05G0104700 Rhododendron simsii HOM05D000367 ORTHO05D001438 4.9e-06 55.1 58 50.0
Hund04926 Selenicereus undatus HOM05D006731 ORTHO05D007597 4.9e-06 55.1 54 51.9
vmacro09138 Vaccinium macrocarpon HOM05D007032 ORTHO05D008777 4.9e-06 55.1 57 49.1
Atru.chr3.3956 Acer truncatum HOM05D006731 ORTHO05D007597 6.5e-06 54.7 62 46.8
ATR0559G219 Amborella trichopoda HOM05D006731 ORTHO05D007597 6.5e-06 54.7 74 37.8
AagrBONN_evm.TU.Sc2ySwM_368.515 Anthoceros agrestis HOM05D000367 ORTHO05D007597 6.5e-06 54.7 92 34.8
ClCG02G019930 Citrullus lanatus HOM05D006731 ORTHO05D007597 6.5e-06 54.7 54 50.0
CsaV3_7G009960 Cucumis sativus L. HOM05D006731 ORTHO05D007597 6.5e-06 54.7 54 50.0
MD17G1224600 Malus domestica HOM05D003458 ORTHO05D003854 6.5e-06 54.7 115 33.9
TAR383G0585 Trochodendron aralioides HOM05D003458 ORTHO05D003854 6.5e-06 54.7 83 38.6
unitig_0.g1100 Utricularia gibba HOM05D003458 ORTHO05D003854 6.5e-06 54.7 88 36.4
GSVIVG01024914001 Vitis vinifera HOM05D006731 ORTHO05D007597 6.5e-06 54.7 71 46.5
Actinidia17303 Actinidia chinensis HOM05D007032 ORTHO05D008777 8.4e-06 54.3 53 52.8
AagrBONN_evm.TU.Sc2ySwM_228.263 Anthoceros agrestis HOM05D000367 ORTHO05D001438 8.4e-06 54.3 68 42.6
AL8G36110 Arabidopsis lyrata HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 50.0
arahy.Tifrunner.gnm1.ann1.CL7A41 Arachis hypogaea HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 48.1
arahy.Tifrunner.gnm1.ann1.SZ30AG Arachis hypogaea HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 48.1
BcaB05g22522 Brassica carinata HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 51.9
BraA10t43759Z Brassica rapa HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 51.9
Ciclev10025609m.g Citrus clementina HOM05D000367 ORTHO05D001438 8.4e-06 54.3 58 48.3
COL.COLO4_18569 Corchorus olitorius HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 50.0
Dinv17039 Davidia involucrata HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 48.1
Dinv37016 Davidia involucrata HOM05D007032 ORTHO05D008777 8.4e-06 54.3 53 50.9
Dinv42984 Davidia involucrata HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 48.1
Dinv43115 Davidia involucrata HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 48.1
Eucgr.F03971 Eucalyptus grandis HOM05D003458 ORTHO05D003854 8.4e-06 54.3 112 32.1
Thhalv10014392m.g Eutrema salsugineum HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 50.0
Pp3c18_3800 Physcomitrium patens HOM05D003458 ORTHO05D003854 8.4e-06 54.3 73 41.1
Pp3c19_10460 Physcomitrium patens HOM05D003458 ORTHO05D003854 8.4e-06 54.3 53 50.9
Pp3c26_5100 Physcomitrium patens HOM05D003458 ORTHO05D003854 8.4e-06 54.3 72 37.5
Prupe.3G100300 Prunus persica HOM05D003458 ORTHO05D003854 8.4e-06 54.3 107 32.7
Sed0012402 Sechium edule HOM05D000367 ORTHO05D001438 8.4e-06 54.3 58 48.3
SMO119G0204 Selaginella moellendorffii HOM05D003458 ORTHO05D003854 8.4e-06 54.3 66 42.4
Thecc.09G316600 Theobroma cacao HOM05D006731 ORTHO05D007597 8.4e-06 54.3 54 50.0


User provided reference genes

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