Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.4e-110 402.9 199 100.0
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.1e-78 297.0 197 70.1
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.7e-77 292.4 194 69.1
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 3.5e-77 292.0 194 69.6
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.8e-76 289.7 199 69.8
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 2.3e-76 289.3 194 68.6
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.9e-76 288.5 197 68.5
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 5.1e-76 288.1 194 68.6
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 6.7e-76 287.7 192 69.8
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 6.7e-76 287.7 193 69.9
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 8.7e-76 287.3 193 68.9
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 8.7e-76 287.3 197 68.0
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 1.1e-75 287.0 197 67.0
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.1e-75 287.0 193 69.9
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 1.5e-75 286.6 194 70.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.5e-75 286.6 197 68.0
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.9e-75 286.2 199 69.3
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.5e-75 285.8 195 65.1
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 2.5e-75 285.8 193 67.4
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 3.3e-75 285.4 195 69.2
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 1.6e-74 283.1 197 69.0
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.1e-74 282.7 194 67.0
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.1e-74 282.7 194 64.9
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 2.8e-74 282.3 197 68.0
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 3.7e-74 282.0 194 67.0
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.7e-74 282.0 197 68.0
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 4.8e-74 281.6 193 66.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 4.8e-74 281.6 193 67.9
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.3e-74 281.2 197 67.5
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 6.3e-74 281.2 196 67.3
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 8.2e-74 280.8 197 66.5
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.1e-73 280.4 194 64.4
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.8e-73 279.6 194 66.0
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 2.4e-73 279.3 197 65.5
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 2.4e-73 279.3 194 66.0
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.4e-73 279.3 194 67.5
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 4.1e-73 278.5 194 64.9
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 5.3e-73 278.1 194 66.0
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 5.3e-73 278.1 194 67.5
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.3e-73 278.1 194 67.5
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 6.9e-73 277.7 194 64.4
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 9.0e-73 277.3 197 66.0
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 9.0e-73 277.3 197 65.5
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 9.0e-73 277.3 194 66.0
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 9.0e-73 277.3 197 66.0
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.2e-72 276.9 197 68.5
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.0e-72 276.2 194 66.5
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.0e-72 276.2 194 66.5
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 2.0e-72 276.2 197 65.5
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.6e-72 275.8 194 66.5
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 4.5e-72 275.0 197 68.5
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 4.5e-72 275.0 194 65.5
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 5.9e-72 274.6 197 67.0
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 5.9e-72 274.6 197 64.0
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 7.6e-72 274.2 194 64.9
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 7.6e-72 274.2 197 65.5
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.7e-71 273.1 197 64.5
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.7e-71 273.1 194 64.9
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.2e-71 272.7 197 64.0
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 2.2e-71 272.7 197 65.0
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 2.2e-71 272.7 192 65.6
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.9e-71 272.3 183 69.4
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.8e-71 271.9 197 67.0
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 3.8e-71 271.9 194 66.5
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 3.8e-71 271.9 194 64.9
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 6.5e-71 271.2 197 62.9
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.1e-70 270.4 189 66.1
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.4e-70 270.0 191 68.1
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.4e-70 270.0 197 62.9
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.9e-70 269.6 197 64.5
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.5e-70 269.2 194 64.9
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.5e-70 269.2 194 65.5
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 3.2e-70 268.9 183 68.9
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 5.5e-70 268.1 193 66.3
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 7.2e-70 267.7 183 66.1
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.2e-69 266.9 187 65.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.1e-69 266.2 195 65.6
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.7e-69 265.8 197 65.5
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.6e-69 265.4 197 60.4
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 4.6e-69 265.0 192 65.6
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 7.9e-69 264.2 197 64.5
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.0e-68 263.8 193 64.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 1.3e-68 263.5 197 63.5
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 3.9e-68 261.9 194 64.4
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.9e-68 261.9 197 62.4
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 6.7e-68 261.2 197 64.5
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.1e-67 260.4 193 65.8
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 7.4e-67 257.7 186 65.1
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.3e-66 256.9 194 61.9
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.2e-66 256.1 186 62.4
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.8e-66 255.8 184 62.0
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 6.3e-66 254.6 194 59.3
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.4e-65 253.4 196 60.2
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.8e-65 253.1 184 61.4
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.8e-65 253.1 184 61.4
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.4e-65 252.7 197 59.9
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 3.1e-65 252.3 194 61.9
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 3.1e-65 252.3 194 60.8
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 3.1e-65 252.3 197 60.9
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 4.1e-65 251.9 186 62.9
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 6.9e-65 251.1 191 62.8
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 9.1e-65 250.8 193 63.2
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.2e-64 250.4 197 59.4
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.2e-64 250.4 199 59.3
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.2e-64 250.4 197 59.4
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.2e-64 250.4 185 65.9
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.9e-63 245.7 197 58.9
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 2.9e-63 245.7 197 58.9
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 2.9e-63 245.7 197 59.4
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 3.8e-63 245.4 183 62.3
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 5.0e-63 245.0 170 70.0
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.4e-62 243.4 197 59.4
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 1.9e-62 243.0 195 59.0
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.5e-62 242.7 197 58.9
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 2.3e-60 236.1 191 59.2
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 3.0e-60 235.7 194 58.8
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 2.8e-58 229.2 187 57.8
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 4.8e-58 228.4 183 58.5
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 4.1e-57 225.3 177 58.2
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 5.3e-57 224.9 190 56.8
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.9e-56 221.5 162 66.7
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 6.5e-55 218.0 187 54.5
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.2e-54 215.7 143 65.7
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.6e-53 212.2 156 64.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.4e-52 210.3 144 64.6
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 3.0e-52 209.1 180 54.4
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 2.6e-51 206.1 192 50.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 2.8e-50 202.6 154 62.3
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 4.8e-50 201.8 144 61.8
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 1.2e-48 197.2 144 61.8
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.6e-48 196.8 194 53.1
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.3e-42 177.2 122 73.0
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.8e-41 173.3 114 63.2
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 2.4e-41 172.9 194 48.5
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 1.4e-36 157.1 197 46.7
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.3e-34 150.6 181 43.1
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 8.3e-34 147.9 98 63.3
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 2.7e-32 142.9 183 47.5
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 4.0e-28 129.0 181 40.3
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 5.0e-23 112.1 160 40.0
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 8.6e-23 111.3 74 67.6
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 9.5e-22 107.8 107 48.6
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 4.0e-20 102.4 120 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.0e-19 100.1 121 45.5
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 2.6e-19 99.8 71 59.2
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 2.2e-18 96.7 104 47.1
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 1.1e-17 94.4 194 35.1
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.8e-17 93.6 68 61.8
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.8e-17 93.6 64 59.4
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.1e-12 76.3 58 67.2
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 2.4e-09 66.6 36 91.7
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.5e-06 56.6 45 64.4


User provided reference genes

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