Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 2.5e-29 131.3 63 100.0
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 7.4e-13 76.6 35 100.0
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 4.1e-11 70.9 33 97.0
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.5e-10 68.9 35 88.6
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 3.4e-10 67.8 34 85.3
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 4.5e-10 67.4 34 85.3
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 4.5e-10 67.4 33 87.9
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 7.7e-10 66.6 33 87.9
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.0e-09 66.2 37 78.4
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 1.0e-09 66.2 34 82.4
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.0e-09 66.2 35 80.0
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 1.3e-09 65.9 34 82.4
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 1.7e-09 65.5 34 82.4
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 1.7e-09 65.5 34 85.3
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 1.7e-09 65.5 34 85.3
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 1.7e-09 65.5 34 85.3
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.7e-09 65.5 33 84.8
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 2.2e-09 65.1 34 82.4
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 2.2e-09 65.1 34 82.4
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 2.2e-09 65.1 33 84.8
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 2.2e-09 65.1 35 77.1
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 2.9e-09 64.7 34 79.4
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 3.8e-09 64.3 33 84.8
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 3.8e-09 64.3 33 84.8
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 5.0e-09 63.9 35 77.1
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 6.5e-09 63.5 34 82.4
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 6.5e-09 63.5 34 82.4
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 6.5e-09 63.5 34 82.4
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 8.5e-09 63.2 35 74.3
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 8.5e-09 63.2 35 77.1
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 8.5e-09 63.2 34 76.5
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.4e-08 62.4 34 79.4
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 1.4e-08 62.4 38 71.1
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 1.9e-08 62.0 33 81.8
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 3.2e-08 61.2 33 78.8
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 4.2e-08 60.8 33 78.8
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 5.5e-08 60.5 33 72.7
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 5.5e-08 60.5 34 76.5
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 5.5e-08 60.5 33 78.8
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 7.2e-08 60.1 35 71.4
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 7.2e-08 60.1 35 71.4
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 7.2e-08 60.1 34 70.6
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 7.2e-08 60.1 33 78.8
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 7.2e-08 60.1 34 76.5
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 9.4e-08 59.7 33 78.8
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 9.4e-08 59.7 33 78.8
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 9.4e-08 59.7 33 78.8
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 9.4e-08 59.7 33 78.8
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 1.2e-07 59.3 33 81.8
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 1.2e-07 59.3 35 77.1
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 1.2e-07 59.3 33 75.8
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 1.6e-07 58.9 33 75.8
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 1.6e-07 58.9 35 71.4
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 2.1e-07 58.5 33 78.8
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 2.7e-07 58.2 33 75.8
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 2.7e-07 58.2 33 75.8
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 2.7e-07 58.2 35 68.6
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.7e-07 58.2 33 75.8
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 2.7e-07 58.2 35 74.3
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 2.7e-07 58.2 33 75.8
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 3.6e-07 57.8 33 72.7
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 4.6e-07 57.4 33 72.7
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 4.6e-07 57.4 32 75.0
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 4.6e-07 57.4 33 72.7
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 6.1e-07 57.0 34 64.7
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 7.9e-07 56.6 33 69.7
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 1.0e-06 56.2 33 72.7
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 1.0e-06 56.2 34 67.6
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 1.4e-06 55.8 34 73.5
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 1.4e-06 55.8 33 69.7
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 1.8e-06 55.5 35 68.6
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 1.8e-06 55.5 33 72.7
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 2.3e-06 55.1 33 69.7
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 2.3e-06 55.1 33 69.7
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 2.3e-06 55.1 35 68.6
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 2.3e-06 55.1 34 73.5
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 3.0e-06 54.7 33 72.7
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 3.0e-06 54.7 34 64.7
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 3.9e-06 54.3 33 69.7
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 3.9e-06 54.3 33 69.7
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 5.1e-06 53.9 33 69.7
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 6.7e-06 53.5 33 69.7
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 6.7e-06 53.5 33 69.7
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 6.7e-06 53.5 35 68.6
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 8.8e-06 53.1 33 69.7


User provided reference genes

Program Settings