Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 3.8e-84 314.7 148 100.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 3.8e-68 261.5 148 83.8
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 8.0e-66 253.8 149 80.5
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.4e-65 253.1 148 81.1
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.3e-65 252.3 148 79.1
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.3e-65 252.3 149 81.2
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.0e-65 251.9 148 79.1
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 80.4
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 80.4
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 80.4
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 8.8e-65 250.4 149 80.5
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 8.8e-65 250.4 148 78.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 2.6e-64 248.8 148 79.7
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.4e-64 248.1 148 79.1
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 5.7e-64 247.7 148 78.4
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 5.7e-64 247.7 148 79.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 9.7e-64 246.9 149 78.5
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 9.7e-64 246.9 148 77.7
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 9.7e-64 246.9 148 79.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.3e-63 246.5 149 78.5
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.8e-63 245.4 148 78.4
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 3.7e-63 245.0 148 77.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 4.8e-63 244.6 148 77.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 6.3e-63 244.2 146 81.5
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 6.3e-63 244.2 150 78.7
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 8.2e-63 243.8 148 77.7
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.1e-62 243.4 148 77.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.1e-62 243.4 148 79.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 77.0
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 77.0
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 148 74.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 77.7
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 77.0
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 75.7
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 75.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 75.7
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 76.4
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 80.4
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.0e-62 240.7 150 78.7
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 7.0e-62 240.7 148 77.7
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.2e-61 240.0 151 76.2
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 149 75.8
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.2e-61 240.0 149 75.8
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 76.4
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.6e-61 239.6 146 74.7
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.6e-61 239.6 150 77.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.6e-61 239.6 148 77.7
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.6e-61 239.6 148 76.4
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 76.4
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 77.0
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.5e-61 238.4 142 79.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.9e-61 237.7 149 75.8
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 7.7e-61 237.3 148 75.7
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.0e-60 236.9 152 76.3
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.0e-60 236.9 147 76.9
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.0e-60 236.9 149 75.8
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 1.3e-60 236.5 148 73.6
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 75.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.7e-60 236.1 149 75.8
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 77.7
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 76.4
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 5.0e-60 234.6 148 75.7
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 6.5e-60 234.2 148 74.3
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 6.5e-60 234.2 148 73.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 8.5e-60 233.8 149 75.2
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 8.5e-60 233.8 149 74.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.1e-59 233.4 145 74.5
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.5e-59 233.0 150 73.3
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.5e-59 233.0 148 73.6
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.5e-59 233.0 150 78.0
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.9e-59 232.6 149 73.8
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.2e-59 230.7 148 73.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 7.2e-59 230.7 139 79.1
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 74.3
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 72.3
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.6e-58 229.6 150 73.3
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.1e-58 229.2 148 73.0
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 2.7e-58 228.8 148 72.3
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.7e-58 228.8 148 71.6
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 3.6e-58 228.4 148 70.9
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.6e-58 228.4 148 71.6
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.6e-58 228.4 150 72.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 4.7e-58 228.0 148 73.0
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.7e-58 228.0 142 76.1
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.1e-58 227.6 149 72.5
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 6.1e-58 227.6 149 75.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 6.1e-58 227.6 149 75.2
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 8.0e-58 227.3 150 70.7
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 8.0e-58 227.3 150 71.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 70.3
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.4e-57 226.5 148 74.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.4e-57 226.5 150 74.7
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.8e-57 226.1 148 70.9
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.0e-57 225.3 148 70.9
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 4.0e-57 224.9 148 71.6
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 5.2e-57 224.6 152 72.4
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 5.2e-57 224.6 150 74.7
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.7e-57 224.2 149 72.5
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 6.7e-57 224.2 148 73.0
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.8e-57 223.8 134 79.1
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.2e-56 223.4 134 79.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.2e-56 223.4 134 79.1
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.5e-56 223.0 149 75.2
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.0e-56 222.6 148 71.6
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.6e-56 222.2 148 72.3
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 3.3e-56 221.9 149 71.8
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 5.7e-56 221.1 148 70.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 5.7e-56 221.1 148 69.6
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 5.7e-56 221.1 148 70.3
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 5.7e-56 221.1 148 69.6
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 9.7e-56 220.3 134 74.6
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 148 68.9
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.4e-54 216.5 151 69.5
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.4e-54 215.7 132 77.3
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 9.1e-54 213.8 134 72.4
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.0e-53 212.6 149 67.8
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 3.5e-53 211.8 135 77.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.5e-53 211.5 151 68.2
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.5e-53 211.5 148 70.9
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 5.9e-53 211.1 127 76.4
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.0e-52 208.0 115 79.1
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 6.5e-52 207.6 132 68.9
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-51 206.5 152 68.4
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.5e-51 206.5 148 66.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.2e-51 205.3 152 66.4
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.2e-51 205.3 152 66.4
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 7.2e-51 204.1 153 68.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 7.2e-51 204.1 153 68.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 7.2e-51 204.1 153 68.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.2e-50 203.4 153 64.7
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.2e-50 203.4 152 66.4
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 4.7e-50 201.4 153 67.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 8.0e-50 200.7 153 66.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.0e-49 200.3 148 64.9
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-49 199.5 154 67.5
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.2e-48 196.8 125 76.0
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.5e-48 196.4 148 66.9
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 2.6e-48 195.7 148 66.9
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 9.8e-48 193.7 132 72.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 2.2e-47 192.6 150 65.3
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-47 192.6 150 65.3
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 2.2e-47 192.6 150 65.3
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 8.0e-42 174.1 101 80.2
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.2e-41 171.4 148 61.5
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.5e-40 169.9 148 62.8
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-38 163.3 101 72.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 7.0e-38 161.0 148 58.1
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 9.2e-38 160.6 97 80.4
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.5e-35 152.5 148 54.1
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 8.9e-33 144.1 123 57.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 5.6e-27 124.8 154 46.1
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 6.4e-23 111.3 68 76.5
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 4.1e-22 108.6 132 47.7
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.6e-21 106.7 75 72.0
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 9.5e-19 97.4 90 52.2
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.2e-10 70.5 93 38.7
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 3.2e-06 55.8 66 37.9


User provided reference genes

Program Settings