Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 5.0e-48 194.1 98 100.0
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.0e-21 106.7 61 86.9
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 1.4e-21 106.3 61 88.5
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 1.4e-21 106.3 61 88.5
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 2.3e-21 105.5 61 88.5
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 5.2e-21 104.4 61 85.2
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 5.2e-21 104.4 61 86.9
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 6.7e-21 104.0 61 86.9
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 8.8e-21 103.6 61 85.2
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.1e-20 103.2 61 83.6
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.1e-20 103.2 61 86.9
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 1.5e-20 102.8 61 83.6
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 3.3e-20 101.7 61 78.7
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 3.3e-20 101.7 61 83.6
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 4.4e-20 101.3 61 82.0
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.4e-20 101.3 61 85.2
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 5.7e-20 100.9 61 82.0
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 5.7e-20 100.9 61 83.6
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 7.4e-20 100.5 61 82.0
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 9.7e-20 100.1 61 80.3
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 1.3e-19 99.8 61 82.0
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.3e-19 99.8 61 83.6
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.7e-19 99.4 61 80.3
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 1.7e-19 99.4 61 78.7
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 1.7e-19 99.4 61 83.6
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 2.2e-19 99.0 61 77.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.2e-19 99.0 61 80.3
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 2.8e-19 98.6 61 82.0
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 3.7e-19 98.2 61 80.3
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.7e-19 98.2 61 78.7
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 3.7e-19 98.2 58 84.5
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 4.8e-19 97.8 61 80.3
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 6.3e-19 97.4 61 80.3
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 8.2e-19 97.1 61 80.3
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 8.2e-19 97.1 61 80.3
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 1.1e-18 96.7 63 74.6
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 1.4e-18 96.3 61 78.7
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 1.4e-18 96.3 61 82.0
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 1.4e-18 96.3 61 82.0
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.4e-18 96.3 61 77.0
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.8e-18 95.9 61 77.0
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.8e-18 95.9 61 77.0
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 1.8e-18 95.9 58 82.8
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 1.8e-18 95.9 61 80.3
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 2.4e-18 95.5 61 77.0
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 3.1e-18 95.1 61 80.3
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 3.1e-18 95.1 61 77.0
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 4.1e-18 94.7 61 73.8
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 4.1e-18 94.7 61 75.4
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 4.1e-18 94.7 61 77.0
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 4.1e-18 94.7 61 77.0
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 5.3e-18 94.4 61 78.7
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 7.0e-18 94.0 61 77.0
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.0e-18 94.0 61 77.0
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 7.0e-18 94.0 61 75.4
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 9.1e-18 93.6 61 73.8
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 9.1e-18 93.6 57 80.7
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 1.6e-17 92.8 61 73.8
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 2.0e-17 92.4 63 76.2
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 2.0e-17 92.4 57 77.2
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 3.5e-17 91.7 58 79.3
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.5e-17 91.7 61 73.8
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 4.5e-17 91.3 57 78.9
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 5.9e-17 90.9 61 77.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 5.9e-17 90.9 61 77.0
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 5.9e-17 90.9 55 83.6
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 7.7e-17 90.5 63 73.0
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 1.0e-16 90.1 61 75.4
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 1.3e-16 89.7 59 76.3
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 1.3e-16 89.7 55 81.8
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 2.2e-16 89.0 61 75.4
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 2.2e-16 89.0 61 73.8
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 2.9e-16 88.6 61 73.8
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 3.8e-16 88.2 55 74.5
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 8.5e-16 87.0 61 70.5
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.1e-15 86.7 55 78.2
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.1e-15 86.7 60 71.7
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.1e-15 86.7 79 58.2
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 1.5e-15 86.3 54 83.3
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 1.5e-15 86.3 59 72.9
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 1.5e-15 86.3 50 82.0
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 2.5e-15 85.5 61 72.1
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 2.5e-15 85.5 56 71.4
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 5.5e-15 84.3 55 80.0
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 5.5e-15 84.3 54 74.1
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 5.5e-15 84.3 61 75.4
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 1.2e-14 83.2 55 76.4
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 4.7e-14 81.3 57 70.2
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 8.0e-14 80.5 74 59.5
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.0e-13 80.1 53 75.5
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 1.0e-13 80.1 56 69.6
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 1.4e-13 79.7 52 73.1
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 5.7e-12 74.3 47 80.9
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 7.5e-12 73.9 49 73.5
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.7e-11 72.8 48 77.1
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 3.7e-11 71.6 109 44.0
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 3.5e-09 65.1 35 88.6
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 3.5e-09 65.1 34 91.2
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.5e-09 64.7 35 88.6
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 6.1e-06 54.3 63 46.0


User provided reference genes

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