Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.1e-270 934.5 450 100.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 9.1e-230 800.0 402 94.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 3.2e-219 765.0 457 81.0
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.1e-214 750.0 456 78.7
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 7.0e-214 747.3 456 77.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 2.6e-213 745.3 456 77.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 2.9e-212 741.9 456 77.0
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.0e-212 741.1 457 77.2
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 5.0e-212 741.1 457 77.2
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.1e-211 740.0 457 77.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.5e-211 738.8 459 76.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.2e-211 738.4 457 77.7
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 5.5e-211 737.6 470 76.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 9.4e-211 736.9 457 76.4
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.2e-210 736.5 457 78.1
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 1.0e-209 733.4 460 76.1
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.8e-209 732.6 463 75.8
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 3.0e-209 731.9 448 77.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 8.8e-209 730.3 457 77.0
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.2e-208 729.9 456 75.7
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 2.0e-208 729.2 458 77.1
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.6e-208 728.8 449 77.7
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 2.8e-207 725.3 458 74.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.1e-206 721.8 452 76.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.6e-205 719.5 456 75.7
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.1e-203 713.4 456 74.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-203 712.6 442 76.5
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 5.5e-203 711.1 457 74.2
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 4.7e-202 708.0 455 73.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 4.7e-202 708.0 458 73.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 1.8e-201 706.1 458 72.9
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 6.8e-201 704.1 458 72.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 8.8e-201 703.7 461 71.8
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.5e-200 700.7 444 75.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.3e-199 697.2 456 72.1
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.4e-198 695.7 456 71.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.1e-198 695.3 429 77.2
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.2e-197 693.3 456 71.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 5.9e-197 691.0 458 71.6
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.9e-197 691.0 429 75.8
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 5.9e-197 691.0 452 73.7
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.7e-196 689.5 430 76.5
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 2.3e-196 689.1 457 71.1
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 2.3e-196 689.1 427 75.4
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.9e-195 686.0 429 75.1
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.5e-195 685.6 448 72.8
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.2e-195 684.9 461 70.7
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 5.5e-195 684.5 429 75.3
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 9.5e-195 683.7 452 72.6
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-194 682.9 442 74.4
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.8e-194 682.2 453 71.5
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.6e-194 681.8 456 71.7
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 8.0e-194 680.6 456 71.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.8e-193 679.5 426 74.6
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.5e-192 676.4 457 70.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 4.4e-192 674.9 471 68.8
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.3e-191 673.3 453 71.3
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.8e-191 672.2 467 69.6
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 4.9e-191 671.4 452 71.0
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 5.4e-190 667.9 434 74.0
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.0e-189 666.0 439 73.6
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.7e-189 665.6 453 71.5
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 5.9e-189 664.5 454 69.6
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.7e-188 662.9 436 74.1
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.5e-187 659.1 459 70.4
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.6e-187 657.9 463 69.5
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 6.8e-185 651.0 460 69.8
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-184 649.8 464 69.0
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 7.5e-184 647.5 392 78.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.3e-183 646.7 457 68.3
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.9e-182 642.9 454 70.0
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 5.4e-182 641.3 453 70.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.0e-181 639.4 452 67.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 1.0e-180 637.1 438 71.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.3e-180 636.7 461 67.7
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 6.6e-180 634.4 448 67.9
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 3.3e-179 632.1 489 67.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 4.4e-176 621.7 462 67.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.3e-175 620.2 441 66.7
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.4e-174 616.7 456 62.9
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.4e-174 616.7 441 65.8
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.2e-174 615.5 457 63.9
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 2.1e-173 612.8 459 63.0
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.0e-173 611.3 463 66.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.3e-172 610.1 494 62.1
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.3e-172 609.4 457 63.0
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.9e-172 608.6 467 65.1
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 4.3e-171 605.1 459 63.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 4.3e-171 605.1 460 64.1
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 9.5e-171 604.0 458 62.4
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-170 603.6 458 62.0
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.6e-170 603.2 460 62.2
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.8e-170 602.4 460 62.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.1e-169 600.5 460 62.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.1e-169 600.5 460 62.0
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.1e-169 600.5 367 77.1
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 5.2e-169 598.2 459 62.1
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.2e-168 597.0 454 63.9
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 4.4e-168 595.1 384 75.0
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.7e-167 593.2 470 63.2
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.1e-166 588.6 460 61.5
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 3.6e-162 575.5 395 69.6
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.8e-161 573.2 380 73.9
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 3.4e-160 568.9 430 62.8
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 2.9e-159 565.8 412 64.1
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 9.2e-158 560.8 456 58.6
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 8.7e-156 554.3 440 62.3
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.2e-154 550.4 539 55.7
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.8e-154 549.3 403 64.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.3e-153 545.0 423 61.5
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 2.0e-152 543.1 488 56.4
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 4.4e-152 542.0 420 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.7e-149 532.7 456 58.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.3e-148 529.6 435 57.0
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.8e-146 522.7 436 57.6
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.9e-143 512.7 423 60.3
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.8e-138 495.4 349 67.3
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 8.4e-127 458.0 408 57.8
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.0e-124 451.1 462 51.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.5e-120 435.6 290 72.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 7.7e-120 434.9 456 53.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.9e-119 433.0 343 61.8
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 4.2e-118 429.1 342 60.2
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.6e-117 427.2 289 71.6
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.8e-116 421.4 407 55.5
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.5e-115 420.6 273 73.3
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.0e-108 397.9 329 60.8
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 5.1e-108 395.6 372 49.7
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.0e-95 354.8 443 42.7
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 4.7e-93 345.9 201 78.6
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 6.8e-92 342.0 415 42.4
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 2.5e-78 297.0 280 57.1
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.0e-76 291.6 206 70.4
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-61 241.5 175 67.4
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-54 217.6 217 55.3
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.8e-53 213.8 194 54.6
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 4.0e-52 209.9 180 58.3
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.2e-50 204.1 119 77.3
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 9.3e-41 172.2 109 75.2
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.8e-40 169.1 252 42.9
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.3e-39 167.5 250 42.8
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 3.0e-39 167.2 85 88.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 5.1e-39 166.4 199 46.2
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.4e-34 149.4 233 38.6
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.5e-32 143.7 157 51.0
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 3.3e-30 137.1 99 68.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.7e-26 124.8 250 37.2
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-23 114.8 85 67.1
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 7.4e-22 109.4 71 69.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 3.7e-21 107.1 130 42.3
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 6.5e-18 96.3 57 73.7
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-14 85.1 70 62.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.2e-10 71.2 33 87.9
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 5.0e-10 70.1 66 60.6
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.6e-08 63.5 78 46.2
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.7e-07 59.7 42 64.3


User provided reference genes

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