Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.1e-108 394.4 199 100.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.4e-97 359.0 199 91.5
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 4.3e-75 285.0 160 91.9
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 6.9e-73 277.7 197 72.1
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 9.0e-73 277.3 197 71.6
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.0e-71 273.9 197 72.6
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.7e-71 273.1 198 69.7
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.9e-71 272.3 197 67.5
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 3.2e-70 268.9 196 68.9
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.1e-69 266.2 198 67.7
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.7e-69 265.8 196 67.3
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.6e-69 265.0 194 68.0
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 4.6e-69 265.0 203 68.5
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.0e-68 263.8 197 66.5
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.8e-68 263.1 195 69.2
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.9e-68 261.9 196 65.8
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 3.9e-68 261.9 193 68.4
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 3.9e-68 261.9 199 68.3
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 8.7e-68 260.8 196 67.3
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.5e-67 260.0 197 64.5
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-67 259.6 201 66.2
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.9e-67 259.6 201 64.7
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 3.3e-67 258.8 196 67.9
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 3.3e-67 258.8 196 67.9
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 4.3e-67 258.5 196 68.9
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 4.3e-67 258.5 198 66.7
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 5.7e-67 258.1 196 64.3
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.7e-67 258.1 192 66.1
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 7.4e-67 257.7 197 63.5
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 7.4e-67 257.7 196 64.8
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 7.4e-67 257.7 196 66.3
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 7.4e-67 257.7 198 66.2
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.3e-66 256.9 197 66.5
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.2e-66 256.1 196 66.8
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 4.8e-66 255.0 199 64.8
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 4.8e-66 255.0 197 62.4
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 6.3e-66 254.6 194 66.0
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 8.2e-66 254.2 202 64.4
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 8.2e-66 254.2 198 65.2
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.4e-65 253.4 197 63.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.4e-65 253.4 202 64.9
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.4e-65 252.7 196 64.3
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.3e-65 251.5 196 63.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 6.9e-65 251.1 197 65.5
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 9.1e-65 250.8 189 65.1
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 9.1e-65 250.8 208 62.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.2e-64 250.4 197 65.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.2e-64 250.4 196 63.3
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.5e-64 250.0 199 62.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 2.0e-64 249.6 199 63.8
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.6e-64 249.2 189 66.1
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.6e-64 249.2 202 63.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 3.4e-64 248.8 197 63.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 4.5e-64 248.4 199 60.3
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.3e-63 246.9 189 65.6
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.7e-63 246.5 207 61.8
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 2.2e-63 246.1 198 63.6
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 2.9e-63 245.7 206 62.1
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.9e-63 245.7 196 63.8
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.9e-63 245.7 196 62.8
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.9e-63 245.7 199 59.8
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.8e-63 245.4 189 64.6
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 8.5e-63 244.2 196 62.2
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 8.5e-63 244.2 200 63.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.4e-62 243.4 189 64.0
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.9e-62 243.0 185 67.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.9e-62 243.0 196 62.2
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.5e-62 242.7 196 61.7
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 3.2e-62 242.3 190 62.1
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 7.2e-62 241.1 188 61.7
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 9.4e-62 240.7 206 61.2
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 2.1e-61 239.6 206 61.2
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 2.1e-61 239.6 196 62.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.7e-61 239.2 199 62.3
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 3.6e-61 238.8 209 60.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 5.1e-60 235.0 195 64.1
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 2.0e-59 233.0 190 60.5
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 2.6e-59 232.6 214 57.9
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.7e-59 231.5 180 62.8
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.7e-58 229.9 211 57.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 2.2e-58 229.6 200 56.5
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.7e-58 228.8 209 58.9
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.1e-57 227.3 196 57.7
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.0e-56 223.0 191 60.7
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 2.6e-56 222.6 191 60.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.6e-56 222.6 197 58.9
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.4e-56 222.2 197 58.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 5.9e-56 221.5 195 57.4
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 5.9e-56 221.5 186 60.2
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.7e-56 221.1 195 59.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.7e-55 219.9 150 68.7
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.2e-55 219.5 199 58.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.9e-55 219.2 171 63.7
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 3.8e-55 218.8 201 57.2
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 8.5e-55 217.6 196 59.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.7e-53 212.6 198 59.1
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 2.7e-53 212.6 191 56.5
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.7e-53 212.6 260 48.8
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 4.7e-53 211.8 195 55.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 4.7e-53 211.8 197 56.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 6.1e-53 211.5 297 43.8
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 3.0e-52 209.1 197 56.3
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 9.7e-51 204.1 196 54.1
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.7e-50 202.2 198 57.6
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.7e-50 202.2 196 57.1
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 3.7e-50 202.2 196 58.2
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 4.8e-50 201.8 197 54.3
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 8.2e-50 201.1 196 56.1
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.1e-49 200.7 197 55.8
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.1e-49 200.7 197 55.8
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 2.4e-49 199.5 200 54.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 5.3e-49 198.4 197 55.3
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.6e-48 196.8 197 54.8
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-46 190.7 197 53.3
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.1e-45 184.9 185 51.4
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 6.1e-45 184.9 197 51.3
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.4e-44 183.7 197 55.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 3.0e-44 182.6 199 49.7
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 3.0e-44 182.6 127 67.7
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 4.0e-44 182.2 154 63.0
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.2e-44 181.8 156 62.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.0e-43 179.9 161 57.8
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 7.5e-43 177.9 198 49.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 4.8e-42 175.3 197 50.8
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 9.1e-41 171.0 180 50.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 3.8e-39 165.6 179 46.4
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.5e-38 162.9 196 49.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 3.4e-35 152.5 141 48.9
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.7e-34 150.2 169 47.9
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 5.9e-32 141.7 99 69.7
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.0e-31 141.0 127 58.3
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 6.5e-31 138.3 95 70.5
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.2e-29 134.0 188 43.1
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 6.8e-28 128.3 124 49.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 5.7e-27 125.2 100 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.7e-26 123.6 134 47.0
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 8.3e-26 121.3 118 53.4
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.4e-25 119.8 154 40.9
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 2.0e-24 116.7 102 53.9
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.9e-22 110.2 102 62.7
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 3.3e-22 109.4 145 48.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.6e-21 107.1 106 53.8
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.7e-21 105.5 106 48.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.0e-20 104.4 105 53.3
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 5.2e-20 102.1 97 56.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 6.8e-20 101.7 142 40.8
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-19 100.5 82 67.1
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-19 100.1 117 47.0
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 5.7e-19 98.6 117 47.0
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.6e-16 90.5 141 31.9
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 3.6e-13 79.3 65 58.5
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.2e-11 74.3 57 66.7
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 5.8e-11 72.0 65 55.4
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 7.5e-11 71.6 45 71.1
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 8.3e-10 68.2 66 60.6
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 3.9e-07 59.3 47 57.4
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 2.5e-06 56.6 61 49.2


User provided reference genes

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