Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 2.6e-256 888.3 459 100.0
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 6.4e-255 883.6 457 99.8
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.3e-180 636.0 453 73.7
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.6e-179 632.5 456 75.0
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.7e-175 619.8 453 74.0
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 9.4e-174 614.0 457 72.4
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 2.1e-173 612.8 453 73.1
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 6.1e-173 611.3 463 72.6
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 7.4e-171 604.4 452 71.2
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.4e-169 600.1 414 76.3
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 4.5e-168 595.1 451 71.0
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 2.2e-167 592.8 459 69.7
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 6.5e-167 591.3 453 70.0
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 6.1e-165 584.7 458 69.2
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.5e-163 580.1 458 69.4
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 3.3e-163 578.9 441 71.4
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 4.4e-163 578.6 459 69.7
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.7e-162 576.6 412 73.3
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 1.7e-162 576.6 453 70.0
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 2.8e-162 575.9 447 70.9
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 8.2e-162 574.3 413 73.1
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.8e-161 573.2 409 73.3
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 2.4e-161 572.8 477 66.5
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.1e-161 572.0 451 68.7
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.2e-160 570.5 453 69.8
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.6e-160 570.1 415 72.8
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.0e-160 569.7 455 69.2
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 5.9e-160 568.2 466 67.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.0e-159 567.4 472 66.5
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.0e-159 567.4 417 72.7
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.3e-159 567.0 452 69.7
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 1.3e-159 567.0 460 68.7
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.7e-159 566.6 451 68.7
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 1.7e-159 566.6 456 67.5
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.7e-159 566.6 467 65.7
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 3.8e-159 565.5 410 74.1
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.8e-159 565.5 413 72.9
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.8e-159 565.5 413 72.9
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.0e-159 565.1 465 67.5
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 5.0e-159 565.1 465 67.5
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.1e-158 563.9 447 68.7
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-158 563.5 454 68.3
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.9e-158 563.1 444 70.3
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 3.2e-158 562.4 447 67.6
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 4.2e-158 562.0 455 67.9
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 5.5e-158 561.6 458 68.1
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 7.2e-158 561.2 492 64.2
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 7.2e-158 561.2 418 72.5
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 9.4e-158 560.8 414 71.3
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.2e-157 560.5 456 68.4
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.2e-157 560.5 455 67.0
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.1e-157 559.7 421 70.3
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 3.6e-157 558.9 455 66.8
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.7e-157 558.5 424 70.5
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.7e-157 558.5 413 72.9
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 3.0e-156 555.8 413 72.2
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 3.0e-156 555.8 407 72.7
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.2e-155 553.9 444 69.4
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 3.4e-155 552.4 452 67.0
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.4e-155 552.4 453 67.3
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 5.7e-155 551.6 446 68.4
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-154 549.7 441 68.9
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 2.8e-154 549.3 410 72.0
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 4.8e-154 548.5 419 70.2
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 6.3e-154 548.1 443 67.3
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 4.1e-153 545.4 480 64.8
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.0e-151 540.8 454 65.4
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 2.2e-151 539.7 453 66.2
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 2.9e-151 539.3 537 58.3
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.8e-151 538.9 432 67.6
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 3.8e-151 538.9 432 67.6
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-150 537.3 432 67.4
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.9e-150 536.6 441 65.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 3.2e-150 535.8 570 56.5
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 4.2e-150 535.4 441 69.2
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 7.2e-150 534.6 411 69.3
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 8.0e-149 531.2 453 65.8
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 1.8e-148 530.0 451 66.5
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 4.0e-148 528.9 452 64.8
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 3.4e-147 525.8 409 68.5
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 7.0e-145 518.1 449 64.8
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.0e-144 516.5 438 65.1
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 3.5e-144 515.8 459 64.3
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 3.5e-144 515.8 435 65.5
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.7e-143 513.5 437 65.2
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 2.9e-143 512.7 406 67.0
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 9.5e-142 507.7 453 62.5
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 9.5e-142 507.7 454 63.7
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 2.8e-141 506.1 443 64.1
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.8e-141 506.1 443 64.1
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.8e-140 503.4 441 63.0
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.8e-140 503.4 443 63.7
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 5.2e-140 501.9 486 61.3
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 2.6e-139 499.6 457 62.4
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 3.2e-137 492.7 440 63.2
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 4.6e-136 488.8 395 65.8
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.5e-134 483.8 496 55.2
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 6.8e-132 474.9 368 69.0
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.8e-131 471.9 417 61.9
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 2.9e-130 469.5 453 60.5
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 8.3e-130 468.0 412 62.6
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.9e-129 466.8 412 59.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.2e-128 464.2 413 60.0
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.5e-128 462.6 414 60.9
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.0e-127 461.1 415 61.4
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-127 460.7 413 59.6
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.3e-127 459.9 474 57.4
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 3.9e-127 459.1 473 56.4
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.1e-125 453.4 380 67.4
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.2e-122 443.4 413 60.8
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.4e-121 440.7 465 56.1
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 6.6e-119 431.8 413 59.6
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 8.6e-119 431.4 434 56.9
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 2.5e-118 429.9 345 69.9
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 4.3e-118 429.1 376 65.2
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-117 427.2 425 55.1
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.6e-117 427.2 416 58.4
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 4.0e-116 422.5 378 62.4
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.8e-112 408.3 375 58.7
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 7.3e-110 401.7 362 60.5
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 9.0e-108 394.8 379 56.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.8e-106 389.4 379 55.9
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.4e-105 387.5 385 58.4
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.7e-98 364.0 377 56.8
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 3.9e-95 352.8 589 40.2
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 8.7e-95 351.7 372 55.6
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-88 330.5 406 49.3
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.3e-85 321.2 345 54.2
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 5.3e-84 315.8 294 61.2
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 9.0e-84 315.1 338 55.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.0e-83 313.9 321 55.1
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 1.6e-80 304.3 369 47.7
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 2.2e-74 283.9 321 52.6
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 6.1e-72 275.8 278 55.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.5e-70 271.2 291 51.5
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.5e-67 259.6 297 52.5
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 2.4e-60 237.3 121 95.9
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 7.2e-57 225.7 260 55.4
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 3.9e-55 219.9 281 50.9
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.0e-47 195.3 191 56.5
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.8e-47 194.5 322 36.6
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.1e-44 185.3 237 45.1
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.2e-42 177.6 99 91.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 1.4e-39 168.3 159 63.5
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 7.5e-38 162.5 162 63.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 5.4e-36 156.4 128 72.7
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 4.9e-29 133.3 103 68.0
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 4.3e-25 120.2 161 50.9
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 7.3e-25 119.4 157 45.9
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.2e-23 113.2 66 87.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 3.4e-22 110.5 74 71.6
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 1.7e-21 108.2 151 43.7
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 8.3e-21 105.9 58 89.7
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 9.2e-20 102.4 59 79.7
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.2e-20 102.4 59 79.7
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 2.0e-19 101.3 98 54.1
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 1.1e-17 95.5 51 88.2
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 7.3e-17 92.8 83 62.7
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 4.7e-16 90.1 51 86.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.3e-15 87.8 51 84.3
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 8.9e-15 85.9 55 78.2
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.5e-14 85.1 83 61.4
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 1.5e-14 85.1 105 49.5
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.7e-13 81.6 149 40.3
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.9e-13 80.9 67 58.2
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 3.7e-13 80.5 51 78.4
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.7e-13 80.5 79 58.2
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 8.6e-10 69.3 88 52.3
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 2.5e-09 67.8 81 54.3
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-08 63.9 36 88.9
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 4.7e-08 63.5 35 80.0
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 6.8e-07 59.7 66 53.0


User provided reference genes

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