Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 9.5e-132 473.8 289 100.0
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 2.0e-89 333.2 289 65.1
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 1.4e-82 310.5 290 62.1
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 3.1e-82 309.3 289 65.4
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 2.0e-81 306.6 289 61.6
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 4.5e-81 305.4 289 60.2
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 5.7e-76 288.5 290 58.6
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 2.8e-75 286.2 288 57.6
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.7e-75 285.8 285 57.9
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 4.8e-75 285.4 290 58.6
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 6.3e-75 285.0 291 56.7
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 2.4e-74 283.1 292 57.5
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 5.3e-74 282.0 292 57.5
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.2e-73 280.8 290 56.6
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 1.5e-73 280.4 290 55.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 5.0e-72 275.4 295 56.3
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 1.1e-71 274.2 290 55.9
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.4e-71 273.9 295 56.3
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.5e-71 273.1 309 53.7
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.2e-71 272.7 291 56.0
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.2e-71 272.7 291 56.0
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 7.2e-71 271.6 289 57.1
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 9.4e-71 271.2 289 55.4
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 1.6e-70 270.4 241 61.0
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.6e-70 270.4 290 55.2
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.1e-70 270.0 291 55.3
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.1e-70 270.0 240 61.2
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 2.1e-70 270.0 291 56.0
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 4.7e-70 268.9 291 57.0
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 6.1e-70 268.5 257 60.3
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 6.1e-70 268.5 241 61.0
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 8.0e-70 268.1 241 62.2
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 5.2e-69 265.4 290 54.8
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 5.2e-69 265.4 292 53.8
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 8.8e-69 264.6 290 54.5
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 8.8e-69 264.6 307 53.4
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.1e-68 264.2 297 53.5
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 7.4e-68 261.5 322 51.9
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 2.2e-67 260.0 290 50.7
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 6.3e-67 258.5 288 54.2
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 2.4e-66 256.5 289 52.6
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 3.1e-66 256.1 290 57.2
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 4.1e-66 255.8 286 53.5
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 7.0e-66 255.0 291 54.0
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 7.0e-66 255.0 299 52.8
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 7.0e-66 255.0 290 50.3
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 9.1e-66 254.6 291 52.9
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 2.6e-65 253.1 290 51.4
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 5.9e-65 251.9 293 52.9
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 5.9e-65 251.9 292 53.4
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 1.0e-64 251.1 290 53.1
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 1.7e-64 250.4 291 53.3
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.2e-64 250.0 298 51.0
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 5.0e-64 248.8 290 50.7
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 5.0e-64 248.8 289 50.2
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 1.5e-63 247.3 242 58.3
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 1.5e-63 247.3 290 50.3
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 9.4e-63 244.6 291 49.1
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 9.4e-63 244.6 293 50.5
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.2e-62 244.2 240 58.8
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.2e-62 244.2 288 49.3
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 1.6e-62 243.8 240 58.3
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 2.1e-62 243.4 261 54.0
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 3.6e-62 242.7 292 49.3
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 4.7e-62 242.3 289 50.5
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 6.1e-62 241.9 256 54.7
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 6.1e-62 241.9 249 62.2
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 3.0e-61 239.6 294 50.7
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 3.0e-61 239.6 292 50.7
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 4.0e-61 239.2 243 56.4
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.2e-60 237.7 290 49.0
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 1.2e-60 237.7 290 51.4
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.2e-60 237.7 354 44.4
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 2.0e-60 236.9 339 45.4
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 2.6e-60 236.5 290 49.3
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 9.7e-60 234.6 249 55.0
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.3e-59 234.2 248 54.0
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 1.3e-59 234.2 290 49.3
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 2.2e-59 233.4 292 48.6
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 3.7e-59 232.6 289 57.4
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 6.3e-59 231.9 290 51.7
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 1.8e-58 230.3 290 49.0
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.8e-58 230.3 240 54.2
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.4e-58 229.9 284 50.4
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.3e-58 228.8 248 52.8
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 7.0e-58 228.4 295 48.1
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 1.2e-57 227.6 290 46.9
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 2.0e-57 226.9 289 48.1
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 2.0e-57 226.9 289 46.4
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 2.7e-57 226.5 249 52.6
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 4.5e-57 225.7 242 53.3
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 4.5e-57 225.7 331 46.2
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 5.9e-57 225.3 248 51.6
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.0e-56 224.6 289 46.7
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.9e-56 223.0 290 53.1
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.1e-55 221.1 289 47.1
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.2e-55 219.5 254 51.6
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.2e-55 219.5 174 70.1
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 7.2e-55 218.4 290 45.9
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 3.6e-54 216.1 292 47.6
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 4.7e-54 215.7 303 47.5
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 1.4e-53 214.2 257 47.9
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 6.8e-53 211.8 257 47.5
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 3.7e-51 206.1 289 44.6
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 1.1e-50 204.5 192 59.9
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 2.4e-50 203.4 290 43.8
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 5.4e-50 202.2 296 43.9
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 7.0e-50 201.8 241 49.0
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 9.1e-50 201.4 241 49.0
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 9.1e-50 201.4 241 49.0
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.6e-49 200.7 249 47.0
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 2.0e-49 200.3 478 34.1
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 2.1e-46 190.3 289 43.3
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 2.1e-46 190.3 289 43.3
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 2.1e-46 190.3 289 43.3
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 8.0e-46 188.3 509 32.0
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 1.0e-45 188.0 289 42.9
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.4e-45 187.6 289 43.3
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 3.0e-45 186.4 289 43.3
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 1.3e-43 181.0 284 45.1
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 1.7e-40 170.6 233 48.1
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 3.9e-40 169.5 138 67.4
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 7.5e-36 155.2 145 59.3
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 2.2e-35 153.7 178 51.1
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.2e-35 153.7 289 39.1
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.9e-35 153.3 289 39.4
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 1.9e-34 150.6 247 42.5
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.2e-33 147.9 245 41.2
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 5.6e-31 139.0 129 60.5
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 8.0e-30 135.2 237 41.4
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 5.2e-29 132.5 143 51.0
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 8.9e-29 131.7 230 40.9
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 2.6e-28 130.2 180 44.4
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 1.7e-27 127.5 137 51.1
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 1.1e-26 124.8 243 35.8
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 1.2e-25 121.3 86 74.4
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 7.8e-25 118.6 259 35.5
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 4.3e-23 112.8 241 34.4
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 5.6e-23 112.5 111 59.5
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 9.5e-23 111.7 118 53.4
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 9.2e-18 95.1 136 44.9
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 7.8e-17 92.0 151 36.4
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.5e-15 87.8 237 31.2
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.3e-15 86.7 167 36.5
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.7e-14 82.8 160 35.6
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 6.2e-14 82.4 176 35.8
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.0e-13 79.7 162 35.2
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.9e-13 78.6 166 33.1
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.8e-11 73.2 71 53.5
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.9e-11 72.8 172 32.6
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.4e-11 72.0 72 50.0
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.1e-10 71.6 77 46.8
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.4e-10 71.2 161 31.7
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.2e-10 70.1 85 47.1
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 5.4e-10 69.3 71 47.9
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.7e-09 67.0 74 47.3
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.3e-08 64.7 175 30.3
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 3.0e-08 63.5 96 42.7
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 3.0e-08 63.5 96 42.7
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 5.1e-08 62.8 172 29.7
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 1.5e-07 61.2 168 26.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-07 60.1 197 26.9
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 5.6e-07 59.3 82 40.2
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 5.6e-07 59.3 90 42.2
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 7.3e-07 58.9 104 34.6
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 7.3e-07 58.9 160 31.2
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 7.3e-07 58.9 89 33.7
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 9.6e-07 58.5 78 43.6
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.3e-06 58.2 160 31.2
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 1.6e-06 57.8 87 39.1
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.6e-06 57.8 83 41.0
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 2.1e-06 57.4 92 40.2
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 2.1e-06 57.4 71 43.7
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.1e-06 57.4 95 36.8
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 2.1e-06 57.4 114 35.1
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 3.6e-06 56.6 96 41.7
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 4.8e-06 56.2 97 37.1
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 4.8e-06 56.2 97 37.1
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 6.2e-06 55.8 97 38.1
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 6.2e-06 55.8 162 28.4
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 8.1e-06 55.5 155 25.8


User provided reference genes

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