Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 3.9e-243 844.3 424 100.0
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 5.9e-215 750.7 425 86.1
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 1.3e-214 749.6 425 86.1
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.3e-214 748.8 425 86.8
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.5e-213 745.3 425 85.4
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 4.3e-213 744.6 425 85.6
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 2.1e-212 742.3 425 85.4
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 3.6e-212 741.5 425 84.9
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 4.7e-212 741.1 425 85.6
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 6.1e-212 740.7 425 84.9
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 1.8e-211 739.2 422 84.6
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 1.8e-211 739.2 425 85.2
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 4.0e-211 738.0 425 84.0
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 5.2e-211 737.6 425 83.5
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 8.9e-211 736.9 425 84.0
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 8.9e-211 736.9 424 84.4
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.2e-210 736.5 425 84.5
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 2.6e-210 735.3 425 84.2
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 3.4e-210 734.9 425 84.9
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 4.4e-210 734.6 425 84.7
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 9.8e-210 733.4 425 84.5
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 1.3e-209 733.0 424 84.0
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.3e-209 733.0 425 84.2
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.3e-209 733.0 425 84.2
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 1.7e-209 732.6 425 83.5
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 1.7e-209 732.6 425 82.4
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.2e-209 732.3 425 84.0
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.9e-209 731.9 425 83.8
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 3.7e-209 731.5 425 84.2
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 6.4e-209 730.7 425 84.0
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 6.4e-209 730.7 426 84.3
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.4e-208 729.6 425 84.5
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.8e-208 729.2 424 83.7
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.4e-208 728.8 424 83.7
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 3.2e-208 728.4 425 84.2
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 4.1e-208 728.0 425 84.7
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.1e-208 728.0 425 83.8
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 7.0e-208 727.2 425 83.3
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.2e-208 726.9 424 83.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 1.6e-207 726.1 425 83.5
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 1.6e-207 726.1 425 83.5
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.6e-207 726.1 426 84.0
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 2.7e-207 725.3 425 82.1
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 2.7e-207 725.3 425 82.6
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 4.6e-207 724.5 426 83.6
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 4.6e-207 724.5 424 83.7
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 7.8e-207 723.8 422 83.6
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.3e-206 723.0 425 83.5
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 1.7e-206 722.6 425 82.6
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 2.3e-206 722.2 422 83.6
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 2.3e-206 722.2 425 82.6
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 2.3e-206 722.2 425 83.1
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 3.9e-206 721.5 425 82.6
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 2.5e-205 718.8 417 84.4
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 7.3e-205 717.2 425 81.9
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.3e-205 717.2 438 80.8
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.2e-204 716.5 421 82.9
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 2.1e-204 715.7 415 83.6
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.8e-204 715.3 422 81.5
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-203 713.0 414 84.1
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 1.8e-203 712.6 421 82.7
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 8.9e-203 710.3 438 80.8
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 2.0e-202 709.1 424 81.6
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 2.0e-202 709.1 449 78.6
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 5.8e-202 707.6 423 81.3
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 7.5e-202 707.2 425 81.6
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 7.5e-202 707.2 425 81.9
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 7.5e-202 707.2 425 81.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 9.8e-202 706.8 425 81.6
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 1.7e-201 706.1 425 82.8
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 2.2e-201 705.7 425 81.2
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 2.2e-201 705.7 425 81.2
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.4e-200 703.0 425 81.2
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 7.0e-200 700.7 425 81.2
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 9.2e-200 700.3 425 80.7
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 9.2e-200 700.3 425 80.7
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 9.2e-200 700.3 425 80.7
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 1.2e-199 699.9 425 81.2
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.3e-198 696.4 425 80.7
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 1.3e-198 696.4 425 80.7
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 1.3e-198 696.4 425 80.2
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 3.0e-198 695.3 420 81.0
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 3.0e-198 695.3 471 74.9
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 5.0e-198 694.5 425 80.5
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 1.5e-197 693.0 421 81.0
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 1.5e-197 693.0 424 79.2
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 7.3e-197 690.6 420 80.5
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 7.3e-197 690.6 424 78.8
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 4.7e-196 688.0 422 80.6
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 6.2e-196 687.6 425 78.6
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 6.2e-196 687.6 422 78.7
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.8e-195 686.0 422 80.3
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.3e-195 685.6 425 77.9
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 4.0e-195 684.9 415 80.7
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.5e-194 682.9 425 77.6
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.9e-193 678.7 413 81.1
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.7e-190 669.5 424 79.0
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 5.1e-190 667.9 425 78.4
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 8.6e-190 667.2 420 76.2
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 6.2e-188 661.0 425 78.1
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 2.4e-187 659.1 425 77.2
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 4.0e-187 658.3 422 75.4
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.8e-187 657.5 425 77.9
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.2e-186 656.8 423 74.9
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 2.0e-186 656.0 423 75.4
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 4.4e-186 654.8 423 74.9
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.8e-186 654.4 419 75.9
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 9.9e-186 653.7 433 77.4
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 3.2e-184 648.7 425 76.0
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.0e-182 643.7 416 76.4
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 5.6e-181 637.9 611 56.8
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 7.3e-181 637.5 413 78.0
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.2e-180 634.4 442 72.9
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.4e-179 633.3 417 76.7
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 5.2e-179 631.3 425 71.8
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.2e-178 630.2 475 70.3
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.6e-178 629.0 415 76.1
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.7e-177 626.3 422 75.1
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 7.8e-175 617.5 402 76.9
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 3.0e-174 615.5 422 71.1
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-173 613.6 416 72.1
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.6e-172 608.6 412 72.3
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.2e-172 607.8 406 73.2
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 1.4e-171 606.7 364 81.9
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.4e-170 602.1 353 81.0
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 3.8e-169 598.6 410 71.7
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.2e-168 595.5 412 72.1
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 5.6e-165 584.7 410 71.5
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 3.7e-164 582.0 430 67.7
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.8e-163 579.7 431 68.7
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 5.3e-163 578.2 340 83.5
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 9.0e-163 577.4 411 66.9
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 4.5e-162 575.1 339 82.6
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 7.6e-162 574.3 340 82.6
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 1.0e-158 563.9 340 79.4
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 6.7e-158 561.2 415 69.9
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.4e-157 557.8 413 66.3
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 6.5e-153 544.7 311 83.3
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.3e-149 532.3 411 64.7
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-140 503.1 424 62.3
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 3.1e-139 499.2 303 80.2
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 3.2e-136 489.2 423 57.0
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 2.2e-132 476.5 281 81.9
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.3e-129 467.2 286 78.7
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 1.0e-126 457.6 442 56.3
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 5.3e-123 445.3 434 53.9
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 8.0e-119 431.4 430 51.2
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 2.7e-114 416.4 235 84.7
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 1.6e-103 380.6 435 46.4
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 3.6e-103 379.4 250 74.8
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.0e-89 332.4 465 44.1
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 3.4e-85 319.7 410 41.2
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.5e-80 304.3 171 84.2
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 9.5e-80 301.6 199 75.9
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 6.8e-70 268.9 154 81.8
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 8.9e-70 268.5 239 60.3
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 1.4e-67 261.2 165 78.2
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 2.1e-63 247.3 166 74.1
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 7.3e-56 222.2 158 73.4
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.3e-55 221.5 253 52.2
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 1.8e-54 217.6 161 65.8
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 1.4e-35 154.8 96 80.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 7.4e-32 142.5 86 77.9
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 8.2e-31 139.0 86 79.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 3.1e-30 137.1 126 61.9
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 2.2e-28 131.0 223 35.0
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.3e-23 115.2 72 75.0
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 7.7e-21 105.9 58 82.8
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 1.4e-19 101.7 129 46.5
Medtr4g065940 Medicago truncatula HOM05D003847 ORTHO05D004976 1.0e-17 95.5 94 57.4
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 3.0e-17 94.0 53 79.2
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 8.8e-17 92.4 168 38.1
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 2.4e-14 84.3 48 83.3
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 2.6e-13 80.9 229 30.1
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 5.9e-13 79.7 53 62.3
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 7.2e-11 72.8 47 70.2
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 3.0e-09 67.4 124 33.9
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 3.9e-09 67.0 38 84.2
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.5e-08 65.1 81 42.0
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 6.3e-07 59.7 47 57.4
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 3.1e-06 57.4 33 75.8
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 5.3e-06 56.6 34 67.6


User provided reference genes

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