Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 0.0e+00 1278.5 665 100.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 4.9e-272 941.0 671 72.7
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 4.0e-258 894.8 667 69.9
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 3.4e-257 891.7 663 68.3
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.0e-253 880.2 666 68.3
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.0e-253 877.9 666 68.8
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 3.1e-250 868.6 672 66.7
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 5.2e-250 867.8 686 65.5
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 7.5e-249 864.0 675 66.7
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 7.5e-249 864.0 666 67.0
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 9.9e-249 863.6 665 68.7
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.1e-244 850.1 664 67.0
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 2.5e-244 849.0 665 65.6
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 4.3e-244 848.2 665 65.6
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.1e-243 845.9 675 64.7
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 2.4e-242 842.4 665 64.5
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 5.2e-242 841.3 665 65.4
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 4.4e-241 838.2 639 68.1
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.1e-239 833.6 711 61.6
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 5.1e-237 824.7 666 63.8
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 1.6e-235 819.7 666 64.1
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 1.3e-232 810.1 660 64.4
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.7e-232 809.7 663 63.7
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 6.4e-232 807.7 671 64.5
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 9.3e-231 803.9 664 63.4
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 7.8e-230 800.8 677 61.9
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.8e-230 800.8 676 64.9
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.0e-229 800.4 658 63.2
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.3e-229 800.0 668 62.4
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.1e-227 792.7 678 64.3
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 6.2e-227 791.2 662 65.1
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 6.2e-227 791.2 744 58.3
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 2.6e-225 785.8 693 60.5
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.0e-221 773.9 702 59.1
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 2.4e-218 762.7 624 62.7
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 4.0e-218 761.9 629 63.3
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 5.3e-218 761.5 666 59.5
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.6e-211 740.0 664 59.8
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 8.2e-211 737.6 663 59.6
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.1e-210 737.3 670 61.0
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.9e-207 726.5 551 66.4
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.2e-206 723.8 690 60.3
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 3.9e-205 718.8 775 55.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 9.7e-204 714.1 638 59.4
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 6.9e-202 708.0 671 57.5
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.4e-194 683.7 564 64.7
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 4.1e-194 682.2 577 61.0
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 4.5e-193 678.7 662 54.8
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.5e-185 652.5 668 56.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 4.5e-185 652.1 666 55.3
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 6.5e-184 648.3 527 65.1
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.6e-182 642.5 528 64.8
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.0e-181 639.4 699 52.4
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.9e-181 639.0 699 52.2
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-180 637.5 675 53.6
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.5e-180 637.1 673 49.9
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 4.8e-171 605.5 706 50.0
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 5.3e-170 602.1 564 58.7
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 2.2e-168 596.7 498 65.3
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.4e-167 591.3 724 48.3
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 3.7e-163 579.3 503 61.0
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 6.3e-163 578.6 348 80.5
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.2e-161 574.3 507 61.9
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.3e-160 570.9 480 62.9
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 8.0e-158 561.6 337 79.8
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.0e-157 559.7 384 74.2
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 6.8e-157 558.5 516 60.3
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 2.6e-156 556.6 429 68.8
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 7.5e-156 555.1 388 71.6
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 3.7e-155 552.7 557 56.2
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 3.3e-151 539.7 360 75.0
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 7.3e-151 538.5 491 60.7
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.2e-150 537.7 455 62.0
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 8.3e-139 498.4 549 55.9
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 8.1e-134 481.9 474 56.3
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 3.4e-132 476.5 367 65.4
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 7.5e-132 475.3 672 42.4
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.7e-131 473.0 474 55.7
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 2.4e-125 453.8 465 56.1
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.4e-122 444.5 667 40.0
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 4.0e-117 426.4 655 40.2
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 8.4e-115 418.7 245 82.0
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.0e-96 357.1 258 70.5
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 1.5e-76 291.6 252 63.5
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.0e-71 274.6 168 77.4
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 9.7e-71 272.3 173 75.7
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.1e-69 267.3 152 84.2
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 7.0e-69 266.2 346 48.8
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 9.1e-69 265.8 369 42.5
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 2.2e-67 261.2 173 71.1
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.8e-67 260.4 309 50.8
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.9e-66 258.1 173 70.5
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 2.2e-62 244.6 174 67.8
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.4e-61 241.9 173 68.2
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 1.1e-58 232.3 173 63.6
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 2.7e-57 227.6 173 63.0
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.6e-57 227.3 178 64.0
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 4.7e-57 226.9 173 63.6
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 8.0e-57 226.1 175 62.3
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.0e-56 225.7 173 62.4
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 6.8e-56 223.0 173 61.3
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 9.8e-55 219.2 132 80.3
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.3e-51 208.8 615 28.3
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 2.1e-49 201.4 115 81.7
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 4.9e-46 190.3 102 86.3
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 4.1e-45 187.2 100 87.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 4.5e-44 183.7 173 53.8
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 4.5e-44 183.7 173 53.8
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 8.6e-43 179.5 244 47.1
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 3.6e-41 174.1 101 80.2
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 6.1e-41 173.3 130 63.1
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 3.0e-40 171.0 133 63.9
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 4.0e-40 170.6 133 63.9
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 3.4e-39 167.5 130 63.8
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 9.2e-37 159.5 869 22.9
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.2e-36 159.1 90 83.3
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 7.5e-31 139.8 113 67.3
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.3e-30 139.0 137 48.9
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.9e-27 127.5 78 75.6
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 8.1e-25 119.8 77 74.0
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.4e-24 119.0 185 33.0
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 4.0e-24 117.5 68 77.9
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 8.9e-24 116.3 68 79.4
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 1.2e-20 105.9 75 66.7
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 8.6e-19 99.8 207 36.2
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.7e-14 85.5 58 65.5
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 5.4e-13 80.5 56 64.3
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.1e-10 72.8 44 79.5
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 8.1e-09 66.6 51 52.9
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 6.8e-08 63.5 259 23.9
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 1.2e-07 62.8 41 68.3
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 2.6e-07 61.6 57 49.1
Lj5g0014115 Lotus japonicus HOM05D002332 ORTHO05D002509 4.4e-07 60.8 259 22.8
Medtr7g016970 Medicago truncatula HOM05D002332 ORTHO05D002509 5.8e-07 60.5 250 23.2
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 5.8e-07 60.5 194 23.7
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 9.9e-07 59.7 258 24.0
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 9.9e-07 59.7 342 22.2
QL10p004201 Quercus lobata HOM05D002332 ORTHO05D002509 1.3e-06 59.3 188 28.2
Psat0s4552g0080 Pisum sativum HOM05D002332 ORTHO05D002509 1.7e-06 58.9 208 23.1
CSS0045499 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.2e-06 58.5 38 68.4
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 2.2e-06 58.5 250 23.6
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.2e-06 58.5 349 20.9
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.2e-06 58.5 379 20.3
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 2.2e-06 58.5 243 23.5
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 2.2e-06 58.5 255 22.7
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 2.2e-06 58.5 342 21.9
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 3.8e-06 57.8 40 70.0
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 4.9e-06 57.4 129 34.9
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 4.9e-06 57.4 251 21.1
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 4.9e-06 57.4 246 23.6
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 4.9e-06 57.4 256 23.8
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 6.4e-06 57.0 271 21.4
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 8.4e-06 56.6 246 23.6
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 8.4e-06 56.6 240 24.2
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 8.4e-06 56.6 262 23.7
MD06G1143900 Malus domestica HOM05D002332 ORTHO05D002509 8.4e-06 56.6 188 27.1
Sopen12g023530 Solanum pennellii HOM05D002634 ORTHO05D003100 8.4e-06 56.6 249 24.1


User provided reference genes

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