Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 0.0e+00 2291.9 1189 100.0
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1221.8 1300 54.2
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1207.2 1279 55.7
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1119.4 1452 47.7
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 0.0e+00 1092.4 1316 50.8
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1087.4 1247 51.1
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 1.0e-309 1067.0 1321 48.3
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.2e-308 1063.5 1092 55.9
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 1.7e-307 1059.7 1347 48.4
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 3.7e-307 1058.5 1255 50.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 6.6e-304 1047.7 1269 48.9
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 9.5e-303 1043.9 1046 55.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 8.1e-302 1040.8 976 58.0
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 1.1e-301 1040.4 1269 49.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 9.8e-300 1033.9 1253 50.6
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.3e-299 1033.5 978 57.7
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 4.9e-299 1031.6 1300 48.7
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 6.0e-297 1024.6 1287 49.3
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 4.7e-294 1015.0 1280 48.7
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 6.2e-294 1014.6 1248 49.3
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 4.4e-292 1008.4 1291 48.2
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 8.4e-291 1004.2 1293 48.0
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 7.1e-290 1001.1 1296 48.4
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.6e-289 998.4 1297 47.8
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 6.2e-286 988.0 1114 51.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 8.1e-286 987.6 1294 47.6
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.4e-285 986.9 1251 48.3
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.8e-285 986.5 1303 48.6
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 5.2e-285 984.9 1275 46.6
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 6.8e-285 984.6 1017 54.1
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 6.8e-285 984.6 1017 55.0
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 9.9e-284 980.7 1289 46.9
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.3e-283 980.3 1295 47.1
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-283 979.9 1297 47.6
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 2.9e-283 979.2 1241 48.2
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-281 973.8 1297 47.4
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 2.1e-281 973.0 1319 46.8
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 4.3e-279 965.3 1131 50.8
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.4e-277 959.5 1095 51.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 9.9e-276 954.1 1332 44.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 4.9e-275 951.8 1027 52.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.9e-274 949.9 1286 46.0
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 2.1e-273 946.4 1079 51.3
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 6.0e-273 944.9 1297 47.3
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.0e-272 944.1 1179 49.1
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 6.6e-272 941.4 1300 44.6
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 1.5e-271 940.3 1255 46.9
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 3.3e-271 939.1 1105 49.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 5.6e-271 938.3 1125 50.8
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 7.4e-271 937.9 1314 45.7
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.6e-270 936.8 1300 45.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.6e-270 935.6 1307 46.1
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 8.1e-270 934.5 1234 47.0
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.1e-269 934.1 1104 50.5
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 2.4e-269 932.9 1241 47.0
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 2.4e-269 932.9 1074 51.4
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.1e-269 932.6 1278 46.0
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 5.3e-269 931.8 1266 46.4
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.6e-268 929.5 1210 47.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 4.9e-267 925.2 1037 51.9
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 7.1e-266 921.4 1247 45.5
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 9.3e-266 921.0 1328 43.8
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 1.2e-265 920.6 1246 46.8
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.2e-265 920.6 1322 44.9
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.0e-264 917.5 1268 46.1
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 3.9e-264 915.6 1239 45.8
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 6.2e-262 908.3 1253 45.8
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 8.1e-262 907.9 1234 46.8
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 2.4e-261 906.4 1153 48.5
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 3.1e-261 906.0 1251 45.9
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 3.1e-261 906.0 1309 45.5
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 5.3e-261 905.2 1290 44.9
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 9.0e-261 904.4 1255 45.6
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.0e-259 901.0 1272 44.7
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.0e-259 901.0 1351 43.7
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 4.9e-259 898.7 1242 45.5
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.1e-258 897.5 1236 45.6
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.1e-258 897.5 1236 45.6
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.5e-257 892.5 1242 44.7
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 7.9e-257 891.3 1236 45.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.8e-256 890.2 1251 45.4
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.5e-255 887.1 1239 45.1
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 3.3e-255 885.9 1111 48.1
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.6e-255 884.4 1026 51.3
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 3.7e-254 882.5 969 51.3
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.5e-252 877.1 1079 49.1
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 1.1e-250 870.9 1189 46.5
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 5.1e-248 862.1 934 52.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.3e-246 857.4 1260 44.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 4.8e-246 855.5 1332 42.9
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.5e-236 823.9 1126 46.8
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.4e-236 822.8 1140 46.3
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.3e-235 820.8 1225 43.4
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.3e-232 810.1 1040 45.8
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.2e-226 789.6 1234 41.9
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.5e-220 769.6 1112 43.7
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 5.9e-220 768.8 1223 42.8
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 5.0e-219 765.8 552 69.7
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 9.4e-218 761.5 978 46.2
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 6.1e-217 758.8 1072 44.1
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.5e-207 727.6 1213 42.2
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.3e-206 724.5 1031 45.8
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.5e-194 684.5 518 65.3
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 4.3e-194 682.9 954 44.1
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 9.5e-186 655.2 524 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.1e-172 610.9 990 39.0
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.1e-160 570.5 1188 34.4
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 1.8e-152 544.7 628 48.9
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 2.4e-152 544.3 998 36.6
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 7.4e-114 416.4 1015 31.3
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.0e-79 300.4 246 62.6
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 9.9e-66 256.5 733 31.7
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 9.5e-61 240.0 309 47.2
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 3.8e-57 228.0 167 67.1
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 2.1e-55 222.2 178 64.0
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-50 205.7 273 41.8
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 5.4e-48 197.6 639 28.8
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 2.5e-45 188.7 139 69.8
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 9.3e-32 143.7 225 38.7
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 8.7e-30 137.1 106 59.4
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.8e-27 129.4 118 55.9
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.6e-26 125.6 107 57.9
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 2.2e-25 122.5 121 56.2
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.7e-23 115.5 106 54.7
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 6.0e-23 114.4 84 60.7
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 5.0e-17 94.7 81 63.0
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.5e-16 91.3 120 43.3
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.6e-15 88.6 125 42.4
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 7.9e-15 87.4 116 42.2
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 8.8e-14 84.0 53 69.8
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 7.4e-13 80.9 167 32.3
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.7e-09 69.7 85 42.4
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.6e-07 62.0 113 34.5
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 2.3e-06 59.3 74 43.2
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 3.0e-06 58.9 64 45.3
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 5.1e-06 58.2 129 35.7


User provided reference genes

Program Settings