Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 3.0e-199 698.4 364 100.0
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 2.5e-121 439.5 361 64.8
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 7.8e-115 417.9 365 61.1
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 3.8e-109 399.1 361 59.6
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 1.9e-105 386.7 359 57.7
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 6.9e-103 378.3 361 57.3
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 2.0e-102 376.7 367 56.1
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 1.9e-100 370.2 361 56.2
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.6e-99 367.1 362 54.7
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 3.5e-99 365.9 359 55.2
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 2.3e-98 363.2 359 55.4
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 3.9e-98 362.5 359 55.2
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.1e-97 360.9 371 55.0
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 1.1e-97 360.9 359 55.7
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 2.5e-97 359.8 362 55.5
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 4.3e-97 359.0 363 54.8
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 7.4e-97 358.2 364 52.2
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.3e-96 357.5 362 55.2
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 3.7e-96 355.9 364 53.6
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 2.4e-95 353.2 362 55.2
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.4e-95 353.2 425 48.9
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.1e-95 352.8 360 52.5
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 1.2e-94 350.9 342 56.4
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 4.5e-94 349.0 359 53.8
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 1.0e-93 347.8 348 56.0
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.0e-93 347.8 362 54.4
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.0e-93 347.8 359 52.1
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 1.7e-93 347.1 366 51.6
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.1e-92 344.4 364 52.2
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 1.9e-92 343.6 359 51.5
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 2.5e-92 343.2 367 51.8
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 5.5e-92 342.0 362 52.5
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 5.5e-92 342.0 410 49.3
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 9.3e-92 341.3 365 54.5
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 1.2e-91 340.9 365 51.5
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.1e-91 340.1 365 51.5
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 6.0e-91 338.6 359 52.4
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.8e-90 337.0 362 51.7
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.3e-90 336.7 361 50.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 5.1e-90 335.5 360 51.1
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 8.7e-90 334.7 363 49.3
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.5e-89 334.0 366 50.8
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.5e-89 334.0 407 46.4
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.5e-89 334.0 357 51.8
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.5e-89 333.2 358 50.3
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 4.3e-89 332.4 365 53.4
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.3e-88 330.9 362 50.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.6e-88 330.5 357 51.3
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.6e-88 330.5 357 51.3
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.1e-88 330.1 368 50.8
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 2.1e-88 330.1 368 50.5
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 2.1e-88 330.1 357 51.3
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 2.1e-88 330.1 361 49.3
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.8e-88 328.9 349 52.1
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 8.2e-88 328.2 365 52.1
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.4e-87 327.4 320 56.6
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.4e-87 327.4 364 51.1
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.4e-87 327.4 354 50.8
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.4e-87 326.6 364 49.7
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 4.0e-87 325.9 338 53.6
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 5.3e-87 325.5 339 52.2
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 5.3e-87 325.5 367 49.6
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 5.3e-87 325.5 347 51.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 6.9e-87 325.1 364 48.9
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 9.0e-87 324.7 356 50.3
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 1.5e-86 323.9 363 51.2
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 5.8e-86 322.0 358 50.8
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.0e-85 321.2 350 51.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 1.2e-83 314.3 364 47.3
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 1.6e-83 313.9 360 47.2
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 4.6e-83 312.4 366 47.0
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.0e-82 311.2 364 47.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 1.3e-82 310.8 363 47.7
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.9e-82 309.3 357 49.0
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 3.9e-82 309.3 304 56.9
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 4.8e-80 302.4 357 48.5
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 8.2e-80 301.6 364 46.2
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 9.0e-79 298.1 361 45.7
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.2e-78 297.7 389 44.7
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.5e-78 297.4 358 47.8
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 4.5e-78 295.8 359 44.3
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.7e-78 295.0 357 46.2
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 3.2e-76 289.7 359 46.2
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 9.4e-76 288.1 361 46.3
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 1.2e-75 287.7 359 46.0
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.2e-75 287.7 298 55.4
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 5.1e-74 282.3 361 46.3
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 5.1e-74 282.3 365 44.9
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 6.7e-74 282.0 358 46.1
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.5e-73 280.8 303 51.2
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.5e-73 280.0 349 47.3
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.3e-73 279.3 359 44.6
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.3e-72 277.7 361 45.2
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.7e-72 277.3 361 44.9
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 1.7e-72 277.3 307 51.5
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 1.4e-71 274.2 361 42.9
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 5.9e-70 268.9 356 43.8
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 7.7e-70 268.5 365 44.7
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 2.2e-69 266.9 362 43.9
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 3.8e-69 266.2 362 43.9
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 5.0e-69 265.8 364 42.6
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 9.4e-68 261.5 359 42.3
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.8e-66 257.3 360 41.7
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 2.3e-66 256.9 297 47.8
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 6.7e-66 255.4 337 45.7
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 3.3e-65 253.1 356 42.1
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 4.4e-65 252.7 296 49.3
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 4.4e-65 252.7 370 40.5
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.2e-64 250.4 290 49.7
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 8.2e-64 248.4 319 46.1
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.2e-62 244.6 351 42.2
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 3.5e-62 243.0 348 42.2
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 3.2e-60 236.5 371 39.6
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 8.0e-59 231.9 352 41.8
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.9e-54 215.7 243 51.0
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.5e-53 212.2 340 38.5
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.5e-52 211.1 244 48.4
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.2e-52 209.5 233 52.4
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 5.5e-52 209.1 361 38.2
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 8.0e-51 205.3 342 38.0
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.0e-50 203.0 271 44.3
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 4.0e-50 203.0 241 46.9
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 6.3e-48 195.7 336 38.7
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 4.5e-46 189.5 348 36.5
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.1e-44 184.9 233 45.5
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 9.4e-44 181.8 237 48.5
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 4.7e-43 179.5 298 41.3
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 4.1e-39 166.4 219 46.6
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 7.0e-39 165.6 363 31.4
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 3.7e-32 143.3 372 31.7
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 5.9e-30 136.0 127 54.3
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 4.3e-28 129.8 449 27.2
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 4.9e-24 116.3 150 48.0
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 9.2e-23 112.1 125 46.4
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 2.7e-22 110.5 188 38.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.5e-20 104.8 266 32.0
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.4e-10 71.6 187 31.0
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 3.4e-09 67.0 170 29.4
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 4.1e-07 60.1 58 50.0
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 7.1e-07 59.3 151 31.8
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 7.1e-07 59.3 55 49.1
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 6.0e-06 56.2 55 47.3


User provided reference genes

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