Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.3e-121 439.9 241 100.0
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.4e-90 335.5 213 74.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.1e-88 330.5 238 69.7
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.1e-88 327.8 241 75.5
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 7.1e-88 327.8 241 67.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 9.2e-88 327.4 227 70.9
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 9.2e-88 327.4 238 68.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.2e-87 327.0 241 66.8
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 6.0e-87 324.7 235 68.5
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.7e-86 323.2 213 71.8
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.3e-86 322.8 227 68.3
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.3e-86 322.8 227 68.3
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.3e-86 322.8 227 69.2
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.9e-86 322.0 234 67.9
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 5.1e-86 321.6 227 68.3
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 8.6e-86 320.9 227 75.8
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 8.6e-86 320.9 230 70.9
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.1e-85 320.5 240 66.2
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.5e-85 320.1 227 68.3
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.5e-85 320.1 227 69.2
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-85 319.7 224 70.1
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 1.9e-85 319.7 213 70.4
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.5e-85 319.3 224 68.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.5e-85 319.3 225 68.9
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 3.3e-85 318.9 227 72.2
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 5.6e-85 318.2 227 68.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 5.6e-85 318.2 227 68.7
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 5.6e-85 318.2 227 68.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 5.6e-85 318.2 227 67.0
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 7.3e-85 317.8 230 70.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 9.5e-85 317.4 224 69.2
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 2.1e-84 316.2 227 75.8
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.8e-84 315.8 224 69.6
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 3.6e-84 315.5 227 66.1
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 3.6e-84 315.5 227 66.1
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 4.7e-84 315.1 213 70.0
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 4.7e-84 315.1 213 71.4
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 8.1e-84 314.3 227 69.2
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 8.1e-84 314.3 213 69.0
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.1e-83 313.9 238 66.4
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-83 313.5 213 70.0
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.8e-83 313.2 227 68.7
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.8e-83 313.2 227 66.5
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.1e-83 312.4 232 65.5
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 3.1e-83 312.4 213 70.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.1e-83 312.4 225 66.7
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 4.0e-83 312.0 213 69.5
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 4.0e-83 312.0 213 69.5
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.2e-83 311.6 227 65.6
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 6.8e-83 311.2 226 74.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 6.8e-83 311.2 226 74.8
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 8.9e-83 310.8 213 68.5
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.2e-82 310.5 229 64.6
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.5e-82 310.1 213 69.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.5e-82 310.1 225 66.7
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.6e-82 309.3 249 64.3
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.6e-82 309.3 227 65.6
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.4e-82 308.9 227 67.8
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 5.8e-82 308.1 240 64.6
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 7.6e-82 307.8 249 62.7
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 7.6e-82 307.8 238 66.0
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.6e-82 307.8 212 68.9
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.7e-81 306.6 213 68.1
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.7e-81 306.6 227 65.2
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 6.4e-81 304.7 241 63.5
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.4e-81 304.7 213 70.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 6.4e-81 304.7 213 70.4
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 8.4e-81 304.3 240 62.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.2e-80 302.4 239 64.0
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.4e-80 301.6 240 62.9
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.4e-80 301.6 212 67.0
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.4e-80 301.6 210 69.5
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 7.1e-80 301.2 229 63.8
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 7.1e-80 301.2 227 73.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 7.1e-80 301.2 213 68.5
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 9.2e-80 300.8 213 68.5
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.6e-79 300.1 229 63.8
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.6e-79 300.1 213 67.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.6e-79 300.1 213 66.7
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.6e-79 300.1 227 66.1
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.7e-79 299.3 240 62.1
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.7e-79 299.3 229 63.3
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 2.7e-79 299.3 237 63.3
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.5e-79 298.9 235 64.7
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 6.0e-79 298.1 213 69.0
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 7.8e-79 297.7 215 65.6
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.0e-78 297.4 215 65.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.0e-78 297.4 215 65.6
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.0e-78 297.4 213 67.6
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.3e-78 297.0 213 65.7
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.3e-78 297.0 213 75.6
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.7e-78 296.6 213 65.3
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.3e-78 296.2 227 66.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-78 296.2 224 67.4
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-78 296.2 224 67.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 2.3e-78 296.2 241 60.6
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 3.0e-78 295.8 226 65.0
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 5.1e-78 295.0 230 69.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 6.6e-78 294.7 215 64.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 6.6e-78 294.7 215 64.7
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 8.6e-78 294.3 215 64.7
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 8.6e-78 294.3 215 64.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.1e-77 293.9 241 66.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.1e-77 293.9 229 62.0
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.1e-77 293.9 230 71.3
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.5e-77 292.7 215 64.7
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.3e-77 292.4 213 66.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 4.3e-77 292.0 224 67.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 5.6e-77 291.6 232 64.7
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.2e-76 290.4 233 62.7
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 4.7e-76 288.5 212 67.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.4e-75 287.0 226 62.4
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.4e-75 287.0 227 61.2
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 5.2e-75 285.0 210 64.8
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 5.2e-75 285.0 226 62.4
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 8.9e-75 284.3 228 70.2
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.0e-74 283.1 241 72.6
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.0e-74 283.1 210 63.8
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 7.6e-74 281.2 226 70.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 7.6e-74 281.2 221 62.9
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 9.9e-74 280.8 226 61.5
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.1e-72 277.3 274 53.6
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.1e-68 263.1 236 59.7
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 8.4e-65 251.1 227 59.9
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.0e-62 244.2 180 65.0
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.7e-62 243.4 212 58.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-62 243.4 176 68.8
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.1e-59 234.2 179 64.8
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 6.4e-57 224.9 227 52.9
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 2.7e-55 219.5 211 48.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.0e-55 218.4 162 66.0
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.0e-54 216.1 159 68.6
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.2e-50 204.1 157 61.8
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.9e-49 198.7 186 66.1
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 8.4e-49 198.0 171 59.6
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.0e-46 191.0 200 54.0
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.3e-46 190.7 109 78.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 3.8e-41 172.6 226 42.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 6.5e-41 171.8 213 43.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-40 170.6 132 72.0
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.2e-39 167.5 219 43.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.7e-39 166.4 134 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.0e-38 164.5 227 43.6
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.1e-37 161.0 185 48.1
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 2.0e-34 150.2 90 74.4
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 5.7e-29 132.1 78 78.2
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 7.4e-29 131.7 224 36.2
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 7.7e-26 121.7 126 50.8
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 8.5e-25 118.2 105 57.1
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.4e-24 117.5 99 57.6
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 9.4e-24 114.8 101 62.4
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 6.1e-23 112.1 90 61.1
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 2.3e-22 110.2 158 39.9
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 8.8e-22 108.2 205 35.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.2e-18 97.8 66 74.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-18 97.8 66 74.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.5e-18 95.9 67 67.2
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.9e-18 95.5 67 70.1
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.2e-17 93.6 67 68.7
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.9e-16 90.5 202 27.7
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 3.6e-15 86.3 54 72.2
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 5.7e-13 79.0 76 60.5
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.3e-12 77.8 82 46.3
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-12 77.4 48 72.9
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.5e-08 64.3 44 75.0
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 7.2e-08 62.0 32 93.8
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 9.4e-08 61.6 46 71.7
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 6.1e-07 58.9 36 69.4
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.2e-06 55.8 33 78.8
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 8.8e-06 55.1 39 64.1


User provided reference genes

Program Settings