Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 6.6e-151 537.7 355 100.0
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.7e-94 348.6 370 67.3
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-93 347.4 370 67.3
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.2e-91 340.9 355 69.3
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.5e-89 333.2 353 66.3
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 5.5e-89 332.0 353 67.4
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.7e-88 328.9 355 67.6
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.8e-87 327.0 353 67.1
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 8.8e-87 324.7 353 66.6
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-86 324.3 351 66.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.1e-86 324.3 372 62.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 2.0e-86 323.6 357 65.8
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 3.3e-86 322.8 353 66.6
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 1.7e-85 320.5 353 65.7
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.7e-85 320.5 353 65.2
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 6.3e-85 318.5 355 65.4
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.8e-84 317.0 354 64.7
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.1e-84 316.2 310 71.6
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 4.1e-84 315.8 362 65.2
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 4.1e-84 315.8 362 65.2
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 4.1e-84 315.8 353 64.9
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.2e-83 314.3 359 64.1
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.6e-83 313.9 353 63.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.6e-83 313.2 365 62.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 3.5e-83 312.8 353 62.3
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.7e-82 310.5 353 62.6
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 2.9e-82 309.7 301 71.4
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.9e-82 309.7 361 62.6
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 3.8e-82 309.3 291 73.9
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.8e-82 309.3 354 62.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.5e-82 308.5 357 62.7
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 7.2e-81 305.1 353 63.5
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 7.2e-81 305.1 369 61.8
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 9.4e-81 304.7 299 73.6
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.4e-81 304.7 296 72.3
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.6e-80 302.8 353 63.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 4.7e-80 302.4 353 62.3
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 4.7e-80 302.4 292 64.4
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.0e-79 301.2 304 69.4
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.4e-79 300.8 299 71.6
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.8e-79 300.4 356 62.1
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 3.0e-79 299.7 355 64.8
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.2e-79 298.9 299 71.2
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 5.2e-79 298.9 349 61.9
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.0e-78 297.0 304 69.4
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.6e-78 296.6 366 61.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.4e-78 296.2 361 61.8
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.4e-78 296.2 362 62.2
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 3.4e-78 296.2 360 61.7
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.7e-78 295.4 278 72.7
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 5.7e-78 295.4 353 62.0
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 7.5e-78 295.0 289 70.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.7e-77 293.9 305 69.8
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.2e-77 293.5 369 59.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 2.2e-77 293.5 353 62.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.2e-77 293.5 282 72.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 2.2e-77 293.5 356 61.0
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.7e-77 292.7 288 73.3
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.7e-77 292.7 354 57.3
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.8e-77 292.4 282 72.3
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.1e-76 291.2 298 69.1
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.4e-76 290.0 393 43.5
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.1e-76 289.3 282 72.0
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 7.0e-76 288.5 364 60.7
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 9.1e-76 288.1 292 70.9
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.6e-75 287.3 362 58.3
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.6e-75 287.3 282 70.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 3.5e-75 286.2 356 61.0
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.5e-75 285.8 353 60.3
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 4.5e-75 285.8 350 59.4
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.7e-74 283.9 353 59.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.2e-74 283.5 280 71.1
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 8.5e-74 281.6 238 60.5
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.1e-73 281.2 372 58.3
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 2.5e-73 280.0 370 58.4
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.2e-73 279.6 302 63.2
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 2.1e-72 276.9 370 57.8
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.7e-72 276.6 351 62.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.6e-72 276.2 242 62.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 6.1e-72 275.4 179 73.7
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.0e-71 274.6 355 60.8
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.8e-71 273.9 351 59.8
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 3.0e-71 273.1 282 69.5
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 3.0e-71 273.1 304 65.5
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.0e-70 270.4 355 58.9
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.0e-70 270.4 287 66.6
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.6e-70 270.0 232 59.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 9.8e-70 268.1 282 68.4
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.8e-69 266.5 283 58.7
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 9.1e-68 261.5 352 59.4
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 1.6e-67 260.8 233 59.2
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.7e-67 260.0 234 58.5
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 6.6e-66 255.4 352 57.4
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.5e-65 254.2 166 73.5
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.2e-64 251.1 352 56.2
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.2e-64 251.1 295 63.4
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-64 250.4 352 57.1
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.3e-63 246.9 354 51.7
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.0e-62 243.8 293 65.2
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.0e-62 243.8 309 61.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 7.5e-62 241.9 290 54.5
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.3e-61 238.8 379 38.5
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.8e-60 237.3 303 63.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 2.4e-60 236.9 356 55.1
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 3.2e-60 236.5 431 48.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.0e-59 233.8 354 54.2
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.9e-57 227.3 234 72.2
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 6.1e-56 222.2 195 57.9
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.4e-55 221.1 291 58.4
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-55 220.3 353 53.5
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 3.7e-53 213.0 317 39.7
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 9.2e-52 208.4 288 60.1
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.3e-42 177.9 200 49.5
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.7e-42 177.6 264 59.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.0e-42 176.8 191 75.9
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 5.6e-41 172.6 171 53.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 5.6e-41 172.6 191 75.9
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.2e-40 171.4 190 47.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.4e-39 167.9 240 62.9
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.9e-36 157.5 137 56.2
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.9e-33 147.5 288 50.3
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 5.6e-33 146.0 278 51.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.6e-30 137.1 121 50.4
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.2e-28 130.2 172 44.2
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-27 128.3 171 44.4
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.0e-26 125.2 173 42.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-25 120.9 157 75.8
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.4e-23 114.8 79 64.6
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 2.6e-22 110.5 107 50.5
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 7.6e-22 109.0 142 82.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-18 97.4 81 59.3
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.6e-18 95.9 127 83.5
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 4.3e-17 93.2 111 46.8
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.8e-16 89.7 133 62.4
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.9e-15 85.9 122 86.1
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 2.4e-12 77.4 63 57.1
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.3e-12 75.5 38 86.8
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 2.1e-08 64.3 40 70.0
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 4.8e-08 63.2 50 62.0
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 8.1e-08 62.4 47 63.8
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.5e-06 58.2 53 50.9
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 7.6e-06 55.8 58 46.6


User provided reference genes

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