Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 1.0e-45 186.4 96 100.0
MD13G1100900 Malus domestica HOM05D007247 ORTHO05D009208 1.4e-15 86.3 73 61.6
Haze_12254 Corylus avellana HOM05D007247 ORTHO05D009208 7.1e-15 84.0 73 61.6
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 2.1e-14 82.4 90 58.9
Cfa009217 Carpinus fangiana HOM05D007247 ORTHO05D009208 6.0e-14 80.9 80 55.0
MD16G1101300 Malus domestica HOM05D007247 ORTHO05D009208 6.0e-14 80.9 75 61.3
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.3e-13 79.7 81 55.6
Potri.008G186200 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.0e-13 78.6 92 53.3
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 3.9e-13 78.2 66 65.2
Prupe.1G245600 Prunus persica HOM05D007247 ORTHO05D009208 3.9e-13 78.2 67 64.2
Thecc.02G261000 Theobroma cacao HOM05D007247 ORTHO05D009208 3.9e-13 78.2 86 57.0
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 1.1e-12 76.6 88 51.1
Oeu057538.1 Olea europaea HOM05D007247 ORTHO05D009208 1.5e-12 76.3 90 51.1
Manes.12G022500 Manihot esculenta HOM05D007247 ORTHO05D009208 2.5e-12 75.5 94 50.0
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 3.3e-12 75.1 94 50.0
CANSAT01G0364 Cannabis sativa HOM05D007247 ORTHO05D009208 3.3e-12 75.1 68 61.8
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 3.3e-12 75.1 55 67.3
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 4.3e-12 74.7 80 52.5
COL.COLO4_04829 Corchorus olitorius HOM05D007247 ORTHO05D009208 4.3e-12 74.7 87 52.9
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 4.3e-12 74.7 84 57.1
Glyma.18G144900 Glycine max HOM05D007247 ORTHO05D009208 5.6e-12 74.3 50 72.0
Duzib248G0486 Durio zibethinus HOM05D007247 ORTHO05D009208 9.6e-12 73.6 85 56.5
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.2e-11 73.2 83 54.2
Glyma.08G281800 Glycine max HOM05D007247 ORTHO05D009208 1.2e-11 73.2 55 65.5
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 1.6e-11 72.8 75 54.7
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 1.6e-11 72.8 74 59.5
Psat4g115600 Pisum sativum HOM05D007247 ORTHO05D009208 1.6e-11 72.8 70 58.6
Eucgr.H02494 Eucalyptus grandis HOM05D007247 ORTHO05D009208 2.1e-11 72.4 70 60.0
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 2.1e-11 72.4 66 59.1
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 2.8e-11 72.0 95 47.4
A08p26670 Brassica napus HOM05D007247 ORTHO05D009208 2.8e-11 72.0 57 66.7
Lj4g0020020 Lotus japonicus HOM05D007247 ORTHO05D009208 2.8e-11 72.0 81 58.0
C03p73320 Brassica napus HOM05D007247 ORTHO05D009208 3.6e-11 71.6 57 64.9
BraA08t34615Z Brassica rapa HOM05D007247 ORTHO05D009208 3.6e-11 71.6 57 66.7
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 3.6e-11 71.6 43 76.7
Phvul.003G064700 Phaseolus vulgaris HOM05D007247 ORTHO05D009208 3.6e-11 71.6 41 80.5
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 3.6e-11 71.6 61 65.6
AL2G26710 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 4.7e-11 71.2 68 55.9
Gohir.A03G134800 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.7e-11 71.2 85 54.1
Gohir.D02G158400 Gossypium hirsutum HOM05D007247 ORTHO05D009208 4.7e-11 71.2 85 54.1
Gorai.005G177800 Gossypium raimondii HOM05D007247 ORTHO05D009208 4.7e-11 71.2 85 54.1
Medtr8g069350 Medicago truncatula HOM05D007247 ORTHO05D009208 4.7e-11 71.2 49 71.4
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 4.7e-11 71.2 43 76.7
Ca_22588_v3 Cicer arietinum L. HOM05D007247 ORTHO05D009208 6.2e-11 70.9 80 52.5
Sabra10G0021600 Salix brachista HOM05D007247 ORTHO05D009208 6.2e-11 70.9 86 52.3
Aa31sc790G10 Aethionema arabicum HOM05D007247 ORTHO05D009208 8.1e-11 70.5 93 44.1
BcaB03g12051 Brassica carinata HOM05D007247 ORTHO05D009208 8.1e-11 70.5 67 59.7
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 8.1e-11 70.5 80 55.0
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 1.1e-10 70.1 47 72.3
Hma1.2p1_0079F.1_g041000 Hydrangea macrophylla HOM05D007247 ORTHO05D009208 1.1e-10 70.1 83 53.0
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 1.1e-10 70.1 78 50.0
BcaB03g15384 Brassica carinata HOM05D007247 ORTHO05D009208 1.4e-10 69.7 96 45.8
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 1.4e-10 69.7 96 44.8
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 1.4e-10 69.7 96 44.8
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 1.4e-10 69.7 96 44.8
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 1.4e-10 69.7 96 44.8
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 1.4e-10 69.7 96 44.8
AL1G40330 Arabidopsis lyrata HOM05D007247 ORTHO05D009208 1.8e-10 69.3 53 64.2
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 1.8e-10 69.3 50 68.0
DCAR_026511 Daucus carota HOM05D007247 ORTHO05D009208 2.4e-10 68.9 47 74.5
Actinidia01350 Actinidia chinensis HOM05D000233 ORTHO05D000020 3.1e-10 68.6 65 58.5
BcaC01g01656 Brassica carinata HOM05D007247 ORTHO05D009208 3.1e-10 68.6 57 63.2
BolC3t19629H Brassica oleracea HOM05D007247 ORTHO05D009208 3.1e-10 68.6 57 63.2
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 3.1e-10 68.6 87 50.6
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 3.1e-10 68.6 41 80.5
Potri.010G046700 Populus trichocarpa HOM05D007247 ORTHO05D009208 3.1e-10 68.6 82 51.2
TPR.G17749 Trifolium pratense HOM05D007247 ORTHO05D009208 3.1e-10 68.6 71 59.2
Lj6E813T0 Lonicera japonica HOM05D007247 ORTHO05D009208 4.0e-10 68.2 89 47.2
Manes.13G023600 Manihot esculenta HOM05D007247 ORTHO05D009208 4.0e-10 68.2 77 48.1
Sp1g23190 Schrenkiella parvula HOM05D007247 ORTHO05D009208 4.0e-10 68.2 95 46.3
Actinidia08135 Actinidia chinensis HOM05D007247 ORTHO05D009208 6.8e-10 67.4 65 56.9
Carub.0001s2551 Capsella rubella HOM05D007247 ORTHO05D009208 6.8e-10 67.4 67 52.2
Lalb_Chr09g0326081 Lupinus albus HOM05D007247 ORTHO05D009208 6.8e-10 67.4 82 47.6
Thhalv10009220m.g Eutrema salsugineum HOM05D007247 ORTHO05D009208 8.9e-10 67.0 39 79.5
Solyc05g013560.3 Solanum lycopersicum HOM05D007247 ORTHO05D009208 8.9e-10 67.0 90 52.2
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 8.9e-10 67.0 89 44.9
AT1G67910 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 1.2e-09 66.6 91 46.2
CARHR026490 Cardamine hirsuta HOM05D007247 ORTHO05D009208 1.2e-09 66.6 50 64.0
Migut.E00205 Erythranthe guttata HOM05D000233 ORTHO05D000020 1.2e-09 66.6 41 73.2
THA.LOC104825564 Tarenaya hassleriana HOM05D007247 ORTHO05D009208 1.5e-09 66.2 97 45.4
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 1.5e-09 66.2 74 51.4
TAR636G3342 Trochodendron aralioides HOM05D007247 ORTHO05D009208 2.6e-09 65.5 84 48.8
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 3.4e-09 65.1 66 54.5
CSS0032991 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 4.4e-09 64.7 43 74.4
CSS0043579 Camellia sinensis var. sinensis HOM05D007247 ORTHO05D009208 4.4e-09 64.7 43 74.4
Peaxi162Scf00128g00216 Petunia axillaris HOM05D007247 ORTHO05D009208 5.8e-09 64.3 64 57.8
EL10Ac6g13820 Beta vulgaris HOM05D007247 ORTHO05D009208 7.6e-09 63.9 92 44.6
ECA234G3809 Erigeron canadensis HOM05D007247 ORTHO05D009208 7.6e-09 63.9 42 78.6
Rhsim12G0040300 Rhododendron simsii HOM05D007247 ORTHO05D009208 7.6e-09 63.9 52 67.3
Sopen05g008460 Solanum pennellii HOM05D007247 ORTHO05D009208 7.6e-09 63.9 90 50.0
AUR62024275 Chenopodium quinoa HOM05D007247 ORTHO05D009208 9.9e-09 63.5 52 55.8
TAR636G3092 Trochodendron aralioides HOM05D007247 ORTHO05D009208 9.9e-09 63.5 84 46.4
AUR62005467 Chenopodium quinoa HOM05D007247 ORTHO05D009208 1.7e-08 62.8 52 55.8
Actinidia15099 Actinidia chinensis HOM05D000233 ORTHO05D000020 2.2e-08 62.4 71 50.7
HanXRQChr17g0569581 Helianthus annuus HOM05D007247 ORTHO05D009208 2.2e-08 62.4 40 75.0
AT1G24577 Arabidopsis thaliana HOM05D007247 ORTHO05D009208 6.4e-08 60.8 56 53.6
Sc04g0009510 Simmondsia chinensis HOM05D007247 ORTHO05D009208 8.4e-08 60.5 102 42.2
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.9e-07 59.3 48 54.2
FvH4_4g25640 Fragaria vesca HOM05D007247 ORTHO05D009208 4.2e-07 58.2 64 51.6
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 4.2e-07 58.2 64 51.6
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 5.4e-07 57.8 56 60.7
FAN22G0007 Fragaria x ananassa HOM05D007247 ORTHO05D009208 7.1e-07 57.4 65 50.8
FAN22G1782 Fragaria x ananassa HOM05D007247 ORTHO05D009208 7.1e-07 57.4 65 50.8
PSO063G6114 Papaver somniferum HOM05D007247 ORTHO05D009208 7.1e-07 57.4 77 49.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 7.1e-07 57.4 40 57.5
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 9.3e-07 57.0 67 40.3
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 1.2e-06 56.6 59 44.1
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.2e-06 56.6 63 44.4
RcHm_v2.0_Chr4g0433081 Rosa chinensis HOM05D007247 ORTHO05D009208 1.2e-06 56.6 66 48.5
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 1.6e-06 56.2 52 51.9
DCAR_024425 Daucus carota HOM05D000669 ORTHO05D000679 1.6e-06 56.2 41 65.9
FAN17G2797 Fragaria x ananassa HOM05D007247 ORTHO05D009208 1.6e-06 56.2 64 51.6
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 2.1e-06 55.8 59 55.9
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.1e-06 55.8 64 42.2
FAN07G0181 Fragaria x ananassa HOM05D007247 ORTHO05D009208 3.5e-06 55.1 33 72.7
PSO754G0004 Papaver somniferum HOM05D007247 ORTHO05D009208 3.5e-06 55.1 77 46.8
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.6e-06 54.7 34 67.6
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 4.6e-06 54.7 48 52.1
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 4.6e-06 54.7 36 63.9
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 4.6e-06 54.7 59 49.2
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 4.6e-06 54.7 36 63.9
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 4.6e-06 54.7 42 57.1
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 6.0e-06 54.3 52 50.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 6.0e-06 54.3 52 50.0
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 6.0e-06 54.3 61 45.9
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 6.0e-06 54.3 41 61.0
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 6.0e-06 54.3 72 41.7
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 6.0e-06 54.3 49 51.0
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 7.8e-06 53.9 29 75.9
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 7.8e-06 53.9 71 43.7


User provided reference genes

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