Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 2.0e-194 682.2 321 100.0
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 3.1e-155 552.0 318 78.9
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 6.8e-155 550.8 318 78.6
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 3.4e-154 548.5 318 76.4
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 7.5e-154 547.4 318 77.7
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 7.5e-154 547.4 318 77.7
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 2.2e-153 545.8 318 78.0
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 4.9e-153 544.7 318 76.4
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 6.4e-153 544.3 320 77.2
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.4e-152 542.3 318 76.7
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 5.4e-152 541.2 318 76.7
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.2e-151 540.0 319 76.2
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 1.2e-151 540.0 318 76.1
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 1.2e-151 540.0 318 76.1
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.2e-151 540.0 318 76.7
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 3.5e-151 538.5 318 75.5
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 3.5e-151 538.5 318 76.1
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 1.0e-150 537.0 319 74.9
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 1.3e-150 536.6 318 75.8
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.7e-150 536.2 318 75.2
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.1e-149 533.5 319 74.3
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 1.5e-149 533.1 316 75.9
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.5e-149 532.3 319 74.0
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 4.3e-149 531.6 319 76.5
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 4.3e-149 531.6 320 74.7
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 1.6e-148 529.6 318 73.9
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 4.7e-148 528.1 319 73.7
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 4.7e-148 528.1 318 73.9
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 1.8e-147 526.2 313 74.1
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 3.1e-147 525.4 319 74.3
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 5.2e-147 524.6 318 74.8
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 5.2e-147 524.6 317 74.8
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 1.2e-146 523.5 318 72.0
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 1.2e-146 523.5 318 72.6
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 2.0e-146 522.7 319 73.7
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 2.0e-146 522.7 319 74.9
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 3.4e-146 521.9 319 74.0
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.4e-146 521.9 318 73.3
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 4.4e-146 521.5 318 73.9
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.4e-146 521.5 318 73.9
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 5.8e-146 521.2 318 73.3
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 5.8e-146 521.2 313 73.2
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 9.9e-146 520.4 319 72.4
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.7e-145 519.6 318 73.9
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 2.2e-145 519.2 313 73.2
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 2.2e-145 519.2 319 73.4
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 3.8e-145 518.5 318 73.3
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 3.8e-145 518.5 319 73.4
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 8.4e-145 517.3 318 73.6
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 8.4e-145 517.3 318 72.0
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 1.4e-144 516.5 318 73.6
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.9e-144 516.2 318 72.0
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 3.2e-144 515.4 318 72.3
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 3.2e-144 515.4 321 72.3
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 3.2e-144 515.4 318 72.0
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 4.2e-144 515.0 319 73.0
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 7.1e-144 514.2 319 72.7
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 9.2e-144 513.8 311 74.0
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.6e-143 513.1 319 71.8
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 2.7e-143 512.3 318 71.7
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 4.6e-143 511.5 305 75.4
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 4.6e-143 511.5 321 71.7
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 7.8e-143 510.8 316 74.4
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 1.0e-142 510.4 319 72.4
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.7e-142 509.6 313 72.2
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 1.7e-142 509.6 320 72.2
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 2.3e-142 509.2 313 73.5
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 3.0e-142 508.8 318 70.8
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.0e-142 508.8 318 72.6
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 3.9e-142 508.4 318 72.0
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 3.9e-142 508.4 306 75.2
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.1e-142 508.1 319 71.2
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 5.1e-142 508.1 321 71.3
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.6e-142 507.7 319 71.8
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 8.7e-142 507.3 321 69.5
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 8.7e-142 507.3 306 73.9
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.1e-141 506.9 318 71.1
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.9e-141 506.1 319 71.5
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 2.5e-141 505.8 319 71.2
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 3.3e-141 505.4 318 73.0
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 4.3e-141 505.0 318 70.4
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 4.3e-141 505.0 305 75.7
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.7e-140 501.5 318 70.1
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 2.4e-139 499.2 318 71.1
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 2.4e-139 499.2 305 74.4
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 2.4e-139 499.2 306 72.9
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 3.1e-139 498.8 306 71.6
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 3.1e-139 498.8 318 69.5
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 3.1e-139 498.8 317 70.3
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 9.0e-139 497.3 318 70.8
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.2e-138 496.9 319 68.0
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-138 496.9 318 71.4
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 1.5e-138 496.5 307 73.9
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.0e-138 496.1 318 68.9
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 5.8e-138 494.6 320 69.1
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.2e-137 492.7 308 70.1
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.9e-137 492.3 318 69.8
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.1e-136 490.3 318 66.0
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 1.1e-136 490.3 311 69.1
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 3.2e-136 488.8 318 69.8
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 5.1e-134 481.5 304 69.4
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.1e-133 480.3 308 68.2
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 1.1e-133 480.3 315 68.6
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 4.3e-133 478.4 303 69.0
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 4.3e-133 478.4 309 68.0
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 5.6e-133 478.0 304 69.4
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 7.3e-133 477.6 318 67.3
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 7.3e-133 477.6 309 67.3
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 9.6e-133 477.2 303 68.6
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.6e-132 476.5 304 69.4
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.6e-132 476.5 318 65.1
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 2.1e-132 476.1 318 67.0
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 6.2e-132 474.6 303 68.3
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 8.1e-132 474.2 303 68.3
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 1.8e-131 473.0 303 68.0
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 4.0e-131 471.9 304 68.8
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.0e-131 471.9 295 69.8
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 6.9e-131 471.1 288 73.6
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 2.0e-130 469.5 304 68.4
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 7.6e-130 467.6 288 72.9
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 8.4e-129 464.2 306 65.4
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 6.0e-127 458.0 270 75.6
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 8.7e-126 454.1 317 67.2
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 4.3e-125 451.8 289 70.6
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 1.3e-121 440.3 317 64.4
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.9e-121 439.1 304 65.1
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.9e-121 439.1 319 61.8
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 6.4e-121 438.0 318 62.3
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 5.5e-120 434.9 310 61.3
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 7.9e-119 431.0 316 61.4
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.1e-117 427.2 312 63.8
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.4e-115 419.5 281 66.5
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.8e-110 403.3 306 57.2
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.1e-110 401.7 321 59.2
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 5.1e-110 401.7 321 59.2
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 8.2e-108 394.4 308 57.8
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 6.5e-105 384.8 305 56.4
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 3.0e-102 375.9 303 58.7
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 9.7e-101 370.9 220 75.0
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.7e-100 369.0 216 75.0
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.7e-92 343.6 314 51.9
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 3.8e-89 332.4 309 50.8
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 4.5e-82 308.9 274 56.2
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.2e-72 276.2 310 45.8
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 1.2e-69 267.7 181 68.5
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.4e-61 239.2 260 46.5
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 4.6e-50 202.6 126 68.3
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 6.6e-49 198.7 128 70.3
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.3e-46 190.3 117 71.8
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 9.2e-43 178.3 296 34.8
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 1.3e-36 157.9 329 31.3
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 4.0e-30 136.3 338 27.2
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 6.8e-30 135.6 245 34.7
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 1.2e-29 134.8 98 63.3
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 2.5e-16 90.5 58 72.4
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 6.9e-14 82.4 74 59.5


User provided reference genes

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