Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.0e-70 270.0 141 100.0
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 2.0e-50 202.6 134 75.4
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 2.2e-49 199.1 134 76.9
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 6.4e-49 197.6 134 73.1
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.4e-48 195.7 136 73.5
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 5.5e-48 194.5 134 75.4
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 2.7e-47 192.2 134 73.9
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 6.0e-47 191.0 134 74.6
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 6.0e-47 191.0 134 73.1
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 7.9e-47 190.7 134 73.1
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 1.0e-46 190.3 134 73.9
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.0e-46 190.3 134 73.9
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 1.0e-46 190.3 134 72.4
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 2.3e-46 189.1 136 72.1
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.3e-46 189.1 136 72.1
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 3.9e-46 188.3 141 71.6
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 1.1e-45 186.8 134 73.1
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 2.5e-45 185.7 134 73.1
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 4.3e-45 184.9 134 73.9
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 5.6e-45 184.5 133 71.4
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 5.6e-45 184.5 134 73.9
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 7.4e-45 184.1 128 73.4
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 1.3e-44 183.3 134 70.9
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.3e-44 183.3 134 68.7
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 1.6e-44 183.0 135 74.1
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 2.1e-44 182.6 134 73.1
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 2.1e-44 182.6 134 72.4
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 2.1e-44 182.6 134 70.1
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.8e-44 182.2 134 70.9
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 4.8e-44 181.4 136 71.3
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 8.1e-44 180.6 135 71.9
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-43 180.3 134 73.1
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 1.1e-43 180.3 132 71.2
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 1.1e-43 180.3 134 68.7
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 1.4e-43 179.9 134 70.1
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.4e-43 179.9 135 69.6
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 1.8e-43 179.5 134 68.7
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 2.4e-43 179.1 134 68.7
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.4e-43 179.1 134 72.4
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 2.4e-43 179.1 134 71.6
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.0e-43 178.3 134 67.2
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 5.3e-43 177.9 134 73.1
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 5.3e-43 177.9 134 67.9
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 9.0e-43 177.2 134 70.1
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 1.2e-42 176.8 134 70.1
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.2e-42 176.8 138 66.7
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 1.2e-42 176.8 134 67.9
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 1.2e-42 176.8 134 67.9
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.2e-42 176.8 134 70.9
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.5e-42 176.4 113 77.0
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.5e-42 176.4 134 72.4
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.5e-42 176.4 136 68.4
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 2.6e-42 175.6 139 67.6
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 2.6e-42 175.6 135 69.6
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 2.6e-42 175.6 134 69.4
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 3.4e-42 175.3 136 68.4
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 3.4e-42 175.3 134 67.9
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 3.4e-42 175.3 134 67.9
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 3.4e-42 175.3 134 73.1
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 4.5e-42 174.9 142 67.6
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 5.8e-42 174.5 134 67.9
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 7.6e-42 174.1 134 69.4
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 7.6e-42 174.1 134 69.4
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 1.3e-41 173.3 136 67.6
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 1.3e-41 173.3 125 72.0
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 1.3e-41 173.3 134 64.9
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 1.7e-41 172.9 134 69.4
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 1.7e-41 172.9 134 69.4
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 4.9e-41 171.4 135 68.1
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 6.5e-41 171.0 138 67.4
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 6.5e-41 171.0 138 65.9
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.5e-41 171.0 138 68.8
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 6.5e-41 171.0 138 68.8
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 6.5e-41 171.0 108 81.5
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 8.4e-41 170.6 138 67.4
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 8.4e-41 170.6 136 66.2
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 8.4e-41 170.6 138 68.8
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.4e-41 170.6 138 68.8
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.4e-41 170.6 138 68.8
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.4e-41 170.6 138 68.8
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 8.4e-41 170.6 114 77.2
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 1.4e-40 169.9 120 71.7
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 1.9e-40 169.5 113 75.2
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.9e-40 169.5 138 68.1
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 2.5e-40 169.1 134 67.9
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.2e-40 168.7 138 68.8
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 5.5e-40 167.9 139 65.5
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.2e-39 166.8 113 75.2
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.2e-39 166.8 113 75.2
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.2e-39 166.8 113 75.2
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.2e-39 166.8 113 75.2
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.2e-39 166.8 134 66.4
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-39 166.4 138 68.1
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 2.1e-39 166.0 138 68.1
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-39 166.0 138 68.1
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 2.1e-39 166.0 134 66.4
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 2.7e-39 165.6 135 65.9
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.5e-39 165.2 120 68.3
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 6.0e-39 164.5 135 66.7
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 6.0e-39 164.5 110 75.5
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 7.9e-39 164.1 138 63.0
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 1.0e-38 163.7 121 71.1
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 3.0e-38 162.2 134 62.7
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.9e-38 161.8 120 68.3
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 3.9e-38 161.8 134 64.2
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 8.7e-38 160.6 107 76.6
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 4.8e-36 154.8 113 69.0
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.8e-35 152.9 134 61.9
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.5e-34 149.8 136 61.8
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.4e-34 148.7 116 69.0
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 1.0e-33 147.1 136 59.6
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.7e-33 146.4 114 67.5
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 2.2e-33 146.0 120 61.7
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 5.0e-33 144.8 114 67.5
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 1.9e-32 142.9 132 60.6
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 5.5e-32 141.4 134 59.0
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 7.2e-32 141.0 115 64.3
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 9.3e-32 140.6 134 59.0
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 4.6e-31 138.3 112 67.0
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 3.0e-30 135.6 100 68.0
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 8.7e-30 134.0 134 52.2
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 1.9e-29 132.9 134 55.2
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.2e-28 129.4 126 57.1
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 3.7e-28 128.6 93 68.8
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.1e-27 127.1 120 58.3
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 1.9e-24 116.3 119 52.9
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.2e-23 113.6 92 67.4
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.4e-19 100.1 57 82.5
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 1.4e-19 100.1 92 53.3
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 1.8e-19 99.8 107 47.7
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 5.3e-19 98.2 115 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 1.3e-17 93.6 90 50.0
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 1.3e-17 93.6 111 45.9
Dinv24762 Davidia involucrata HOM05D003270 ORTHO05D003662 6.7e-14 81.3 117 42.7
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 7.4e-13 77.8 76 55.3
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 9.1e-11 70.9 93 47.3
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 5.0e-09 65.1 99 38.4
Actinidia36173 Actinidia chinensis HOM05D005499 ORTHO05D006666 1.9e-08 63.2 83 49.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 5.5e-08 61.6 125 35.2
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 6.1e-07 58.2 48 64.6
Dinv25304 Davidia involucrata HOM05D000009 ORTHO05D000008 1.0e-06 57.4 54 57.4


User provided reference genes

Program Settings