Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 0.0e+00 1243.0 626 100.0
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 3.1e-260 901.7 626 72.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 4.6e-256 887.9 628 70.1
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 4.8e-253 877.9 629 69.8
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.4e-249 866.3 629 69.2
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.2e-248 863.2 628 68.5
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 7.1e-241 837.4 623 67.3
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 3.3e-238 828.6 623 66.1
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 9.6e-238 827.0 623 66.3
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.8e-236 822.8 627 66.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-235 820.1 626 67.4
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.5e-235 819.7 626 67.4
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 6.5e-234 814.3 623 65.2
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 1.9e-233 812.8 627 65.1
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 7.4e-230 800.8 627 64.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 6.9e-228 794.3 624 63.5
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 5.9e-227 791.2 626 64.1
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 5.9e-227 791.2 626 63.3
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 7.6e-227 790.8 626 62.6
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.9e-225 786.2 626 63.1
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 7.2e-225 784.3 659 61.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 5.1e-223 778.1 626 61.3
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.9e-222 776.2 623 63.2
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 3.3e-222 775.4 625 62.2
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.4e-220 770.0 667 61.6
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.4e-220 769.2 626 62.8
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 9.0e-220 767.3 624 61.4
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.2e-219 766.9 624 61.4
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 3.8e-218 761.9 628 60.7
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 5.0e-218 761.5 639 63.1
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 6.5e-218 761.1 609 63.4
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.9e-217 759.6 628 61.8
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 9.4e-217 757.3 628 60.4
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.1e-216 756.1 631 61.0
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 2.1e-216 756.1 626 62.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 6.1e-216 754.6 626 61.5
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 3.9e-215 751.9 628 60.8
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 6.7e-215 751.1 626 62.6
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 6.7e-215 751.1 626 61.3
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 8.8e-215 750.7 626 61.8
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.5e-214 750.0 627 61.9
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.5e-214 750.0 629 60.6
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 2.0e-214 749.6 628 61.0
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.5e-214 749.2 632 60.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 4.3e-214 748.4 629 60.7
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 7.4e-214 747.7 626 62.3
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 9.7e-214 747.3 628 60.7
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 9.7e-214 747.3 625 61.6
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 6.3e-213 744.6 629 60.6
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 8.2e-213 744.2 629 60.4
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.5e-211 738.4 633 59.4
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 7.7e-211 737.6 626 60.2
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 2.2e-210 736.1 628 58.8
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 3.8e-210 735.3 626 62.3
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 8.5e-210 734.2 610 60.3
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.2e-209 732.3 624 59.3
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 4.2e-209 731.9 628 60.2
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 5.5e-209 731.5 638 59.7
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 7.2e-209 731.1 629 60.3
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 9.4e-209 730.7 626 59.7
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.2e-208 730.3 625 60.6
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.6e-208 729.9 626 60.7
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 6.1e-208 728.0 627 59.3
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 6.1e-208 728.0 643 57.2
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 8.8e-207 724.2 628 59.2
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.0e-206 723.0 628 59.2
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 2.0e-206 723.0 627 58.2
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 4.4e-206 721.8 628 59.1
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 3.7e-205 718.8 626 59.6
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.7e-205 718.8 626 58.3
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 3.7e-205 718.8 628 58.6
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 4.1e-204 715.3 626 56.9
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.3e-204 714.9 625 59.8
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 7.7e-203 711.1 626 57.2
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.7e-202 709.9 626 57.3
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.7e-202 709.9 626 58.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 2.2e-202 709.5 626 57.2
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.9e-202 709.1 626 57.2
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.9e-202 709.1 694 55.3
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 3.8e-202 708.8 626 57.0
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 5.5e-201 704.9 576 61.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.6e-200 703.4 630 57.6
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.1e-200 703.0 629 57.1
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 4.7e-200 701.8 626 57.3
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.8e-199 699.9 622 58.8
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.3e-199 699.5 626 58.3
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 4.0e-199 698.7 628 58.4
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 4.0e-199 698.7 663 57.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.2e-197 693.0 691 53.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 8.2e-197 691.0 533 64.5
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.1e-192 676.4 626 55.9
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 6.1e-192 674.9 584 60.1
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.4e-191 673.7 532 65.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.2e-187 660.6 624 54.6
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.8e-181 639.4 628 53.2
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.0e-179 633.3 629 53.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.8e-176 622.9 669 51.3
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.8e-176 622.9 669 51.3
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 4.0e-175 619.0 665 51.3
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 8.9e-175 617.8 635 52.3
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.0e-166 590.1 629 51.8
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.5e-163 579.3 627 51.2
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.6e-163 578.9 621 52.0
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 5.0e-162 575.5 605 51.6
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.4e-156 557.4 626 51.6
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 3.2e-156 556.2 609 51.2
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.6e-155 553.9 493 59.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 4.3e-145 519.2 647 44.8
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 9.9e-142 508.1 405 63.0
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.7e-141 507.3 387 65.1
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 2.4e-140 503.4 643 44.6
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.6e-123 447.6 589 42.3
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.0e-119 433.0 404 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 4.5e-118 429.5 492 46.7
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.8e-112 410.2 407 53.8
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 3.7e-80 303.5 753 30.7
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 2.1e-75 287.7 642 32.4
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 6.3e-72 276.2 671 32.6
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.9e-62 243.0 248 51.2
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 4.4e-57 226.9 271 47.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-54 218.4 219 51.1
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.6e-51 208.4 389 35.0
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.2e-49 202.2 130 73.1
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.4e-47 195.3 163 60.1
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-44 184.5 140 64.3
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.1e-39 169.1 549 26.2
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 8.4e-32 142.9 149 51.0
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.4e-31 142.1 160 47.5
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.1e-30 138.3 152 50.7
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.2e-27 129.0 95 65.3
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.1e-26 125.9 100 65.0
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.4e-23 115.5 170 39.4
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.6e-19 102.1 242 32.2
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 6.2e-19 100.1 130 43.8
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.2e-17 95.9 81 63.0
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.8e-17 93.6 127 44.1
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 4.2e-15 87.4 161 37.3
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 5.4e-15 87.0 112 44.6
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 2.5e-12 78.2 77 51.9
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 1.6e-11 75.5 67 52.2
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 6.2e-11 73.6 49 73.5
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 8.1e-11 73.2 67 52.2
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 2.4e-10 71.6 61 59.0
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 9.0e-10 69.7 69 49.3
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 2.0e-09 68.6 50 66.0
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 7.6e-09 66.6 62 54.8
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.3e-08 65.9 54 51.9
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 1.2e-06 59.3 75 49.3
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 7.9e-06 56.6 74 44.6


User provided reference genes

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