Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1668.7 837 100.0
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1442.9 838 85.1
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1422.1 838 84.0
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1398.6 838 82.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1388.6 838 81.9
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1384.4 838 82.2
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1383.6 838 81.5
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1380.9 837 81.4
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1376.7 838 81.0
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1373.6 840 80.6
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1372.8 838 81.3
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1372.5 838 80.4
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1369.8 838 80.2
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1367.8 838 80.2
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1367.4 838 80.3
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1366.7 838 80.3
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1365.5 838 80.2
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1365.1 838 80.5
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1364.7 838 80.2
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1361.3 838 80.0
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1360.9 838 79.6
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1357.0 826 81.5
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1356.7 838 80.5
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1355.5 868 78.5
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1355.5 838 80.3
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1351.7 840 79.6
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1346.6 838 80.2
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1342.4 840 79.6
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1342.0 858 78.4
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1340.9 830 80.6
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 838 79.8
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1337.4 838 79.8
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1336.2 870 76.7
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1335.1 838 79.6
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1334.7 838 78.3
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1333.2 843 78.3
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1332.4 838 78.4
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 838 79.5
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1331.2 839 78.3
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 838 78.5
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1329.7 838 78.8
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1328.5 841 77.6
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 839 78.4
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 839 78.2
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1327.8 915 74.4
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 838 78.0
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 838 78.5
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1323.5 838 79.1
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1321.2 844 79.0
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1320.4 837 77.8
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1316.6 781 83.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 845 78.0
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1312.0 837 77.4
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1310.4 838 77.9
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1309.7 967 70.2
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1308.5 838 77.1
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 841 77.3
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 838 78.2
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1308.1 838 77.2
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 911 72.8
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1304.7 838 77.6
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1303.9 839 77.2
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1302.3 838 76.6
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1300.8 838 75.8
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1299.6 839 76.9
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 847 76.5
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1298.1 838 76.4
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1298.1 838 76.5
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1297.3 838 77.3
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 840 76.9
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1295.8 847 76.4
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1295.0 858 76.3
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1295.0 838 77.3
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1294.6 847 76.4
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1293.1 904 72.7
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1292.7 838 76.5
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1281.2 837 75.9
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1278.8 911 71.8
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 764 80.9
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1259.6 851 74.9
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1254.2 818 76.7
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1250.7 867 74.0
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1248.8 826 75.9
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1232.6 842 73.8
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1228.0 765 77.9
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1224.5 824 74.6
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1217.6 858 69.7
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1214.5 839 72.0
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1212.6 751 79.6
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1210.7 776 77.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1208.7 768 77.9
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1204.5 842 72.8
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1199.9 838 72.9
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1195.3 788 75.8
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1186.0 805 72.9
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1181.4 839 71.9
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1156.4 839 71.0
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1147.9 844 67.4
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 0.0e+00 1134.8 852 66.8
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1132.1 699 80.4
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1109.0 838 68.9
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1100.1 748 72.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1099.0 697 77.6
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 0.0e+00 1077.0 853 64.9
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.7e-312 1073.9 839 64.7
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.0e-299 1032.3 654 79.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 4.5e-275 951.4 845 62.5
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.7e-251 872.5 642 69.3
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 4.4e-246 855.1 542 76.4
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 3.2e-212 742.7 513 71.5
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 8.4e-205 718.0 418 84.4
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.0e-154 551.6 329 82.1
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.4e-119 434.1 304 76.3
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.6e-115 420.2 307 65.5
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.4e-111 407.5 254 79.9
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 1.2e-105 388.7 285 68.4
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.0e-93 349.0 194 87.6
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 5.6e-84 316.6 261 62.8
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 9.6e-84 315.8 387 48.8
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 3.3e-68 264.2 274 54.4
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 4.8e-67 260.4 182 74.2
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-51 207.6 139 74.8
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.3e-51 206.8 140 72.9
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 4.8e-43 180.6 117 76.1
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 1.1e-34 152.9 94 79.8
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.3e-32 146.0 83 81.9
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 7.2e-31 140.2 144 52.1
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 1.8e-29 135.6 82 82.9
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 5.2e-29 134.0 84 79.8
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.4e-28 131.0 76 84.2
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.2e-25 122.9 94 62.8
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.5e-23 115.2 74 79.7
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 2.0e-20 105.5 67 77.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 7.5e-20 103.6 68 77.9
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 5.0e-16 90.9 105 54.3
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 5.4e-10 70.9 42 85.7
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 3.9e-08 64.7 49 67.3
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 2.8e-06 58.5 41 68.3


User provided reference genes

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