Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 4.9e-113 411.4 241 100.0
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 6.3e-28 128.6 170 48.2
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.8e-27 127.1 159 52.8
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 3.1e-27 126.3 140 50.7
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 3.1e-27 126.3 140 50.7
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 5.3e-27 125.6 81 72.8
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 5.3e-27 125.6 105 60.0
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.2e-26 124.4 76 73.7
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.0e-26 123.6 151 53.6
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 4.5e-26 122.5 96 62.5
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 4.5e-26 122.5 83 69.9
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 5.9e-26 122.1 95 65.3
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 5.9e-26 122.1 70 80.0
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 5.9e-26 122.1 109 57.8
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 5.9e-26 122.1 70 80.0
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 7.7e-26 121.7 92 62.0
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.0e-25 121.3 82 69.5
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-25 120.9 158 57.6
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.3e-25 120.9 113 55.8
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 1.3e-25 120.9 159 52.2
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 1.3e-25 120.9 104 59.6
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.3e-25 120.9 97 63.9
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.7e-25 120.6 74 74.3
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.7e-25 120.6 137 51.1
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.7e-25 120.6 82 68.3
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.7e-25 120.6 169 43.8
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 2.2e-25 120.2 126 62.7
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 2.2e-25 120.2 178 48.3
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.2e-25 120.2 133 51.1
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 2.2e-25 120.2 82 67.1
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 2.9e-25 119.8 147 58.5
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 2.9e-25 119.8 77 70.1
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.8e-25 119.4 112 60.7
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 3.8e-25 119.4 168 47.0
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 5.0e-25 119.0 116 64.7
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 5.0e-25 119.0 132 59.8
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 5.0e-25 119.0 85 65.9
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 5.0e-25 119.0 156 53.2
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 6.5e-25 118.6 92 60.9
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 6.5e-25 118.6 144 57.6
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 6.5e-25 118.6 144 57.6
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 6.5e-25 118.6 128 52.3
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 6.5e-25 118.6 121 61.2
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 6.5e-25 118.6 151 53.6
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 8.5e-25 118.2 129 53.5
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.1e-24 117.9 91 62.6
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.1e-24 117.9 87 62.1
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.9e-24 117.1 153 44.4
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.9e-24 117.1 182 43.4
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 2.5e-24 116.7 154 51.9
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.5e-24 116.7 164 49.4
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 2.5e-24 116.7 107 57.9
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.2e-24 116.3 150 48.0
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 3.2e-24 116.3 199 41.7
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 4.2e-24 115.9 153 45.8
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.2e-24 115.9 99 58.6
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 4.2e-24 115.9 149 48.3
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 4.2e-24 115.9 121 55.4
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 5.5e-24 115.5 84 63.1
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 5.5e-24 115.5 141 51.8
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 5.5e-24 115.5 140 52.9
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 5.5e-24 115.5 156 42.3
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 5.5e-24 115.5 84 64.3
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 7.2e-24 115.2 171 40.4
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 9.4e-24 114.8 124 52.4
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.2e-23 114.4 158 44.9
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.2e-23 114.4 120 47.5
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 1.2e-23 114.4 145 49.7
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 1.6e-23 114.0 73 68.5
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.1e-23 113.6 82 67.1
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.1e-23 113.6 109 55.0
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 2.7e-23 113.2 71 70.4
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.7e-23 113.2 72 69.4
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 2.7e-23 113.2 152 44.1
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.6e-23 112.8 127 59.1
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 3.6e-23 112.8 112 56.2
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 3.6e-23 112.8 185 41.1
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 4.7e-23 112.5 91 58.2
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 6.1e-23 112.1 91 57.1
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 7.9e-23 111.7 160 45.0
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.0e-22 111.3 213 43.2
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.0e-22 111.3 216 39.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.4e-22 110.9 119 49.6
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.4e-22 110.9 189 39.7
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 1.4e-22 110.9 132 48.5
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 1.8e-22 110.5 232 37.5
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 1.8e-22 110.5 103 59.2
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.8e-22 110.5 98 56.1
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 1.8e-22 110.5 90 63.3
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 1.8e-22 110.5 85 62.4
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 2.3e-22 110.2 175 40.6
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 3.0e-22 109.8 194 43.3
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 3.0e-22 109.8 135 50.4
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 3.9e-22 109.4 90 54.4
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 5.2e-22 109.0 137 54.0
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 6.7e-22 108.6 207 41.5
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 8.8e-22 108.2 104 50.0
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-21 107.8 162 46.3
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 1.1e-21 107.8 79 63.3
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.1e-21 107.8 86 53.5
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.5e-21 107.5 103 53.4
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 1.5e-21 107.5 86 61.6
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 1.5e-21 107.5 90 55.6
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 2.0e-21 107.1 151 43.0
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 2.6e-21 106.7 96 55.2
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.6e-21 106.7 158 42.4
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.3e-21 106.3 72 66.7
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 3.3e-21 106.3 66 66.7
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 4.4e-21 105.9 101 53.5
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 4.4e-21 105.9 142 46.5
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 5.7e-21 105.5 197 42.6
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 5.7e-21 105.5 81 56.8
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 5.7e-21 105.5 141 48.9
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 5.7e-21 105.5 69 62.3
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 9.7e-21 104.8 85 61.2
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-20 104.4 92 57.6
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 1.3e-20 104.4 86 60.5
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 1.7e-20 104.0 90 57.8
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 2.2e-20 103.6 90 57.8
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.8e-20 103.2 98 55.1
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 3.7e-20 102.8 94 54.3
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 3.7e-20 102.8 90 56.7
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 4.8e-20 102.4 85 56.5
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 4.8e-20 102.4 87 54.0
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 8.2e-20 101.7 91 51.6
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 8.2e-20 101.7 84 59.5
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.1e-19 101.3 85 57.6
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-19 100.9 84 58.3
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-19 100.9 84 58.3
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-19 100.9 84 58.3
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 1.4e-19 100.9 118 50.0
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 1.4e-19 100.9 66 69.7
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 1.8e-19 100.5 165 39.4
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 2.4e-19 100.1 220 37.3
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 4.1e-19 99.4 83 57.8
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 7.0e-19 98.6 147 44.2
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 7.0e-19 98.6 147 44.2
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.0e-19 98.6 176 42.0
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 1.2e-18 97.8 185 39.5
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 1.2e-18 97.8 185 39.5
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.6e-18 97.4 90 51.1
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 2.0e-18 97.1 134 43.3
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.5e-18 95.9 86 51.2
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 6.5e-17 92.0 88 54.5
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 6.5e-17 92.0 110 46.4
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 3.2e-16 89.7 98 48.0
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 1.6e-15 87.4 72 54.2
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 6.1e-15 85.5 203 34.5
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 1.0e-14 84.7 140 39.3
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 5.2e-14 82.4 86 50.0
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 5.2e-14 82.4 86 50.0
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 5.2e-14 82.4 86 50.0
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 5.2e-14 82.4 86 50.0
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 1.5e-13 80.9 60 55.0
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 7.5e-13 78.6 155 34.2
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 2.8e-12 76.6 125 45.6
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.8e-12 76.6 125 45.6
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 8.2e-12 75.1 152 38.2
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 4.1e-11 72.8 157 39.5
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 7.0e-11 72.0 59 52.5
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 1.2e-10 71.2 97 43.3
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 3.5e-10 69.7 65 46.2
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 4.5e-10 69.3 70 45.7
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.0e-09 68.2 195 28.2
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 5.0e-09 65.9 90 36.7
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.1e-08 64.7 75 44.0
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.5e-08 64.3 74 47.3
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 1.9e-08 63.9 72 43.1
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 2.5e-08 63.5 61 44.3
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.2e-08 62.8 75 41.3
Carub.0006s0105 Capsella rubella HOM05D003879 ORTHO05D003858 5.5e-08 62.4 88 43.2
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 5.5e-08 62.4 180 27.8
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.2e-07 61.2 74 39.2
BcaB03g13129 Brassica carinata HOM05D015260 ORTHO05D003858 2.1e-07 60.5 99 36.4
AL1G30600 Arabidopsis lyrata HOM05D013370 ORTHO05D016580 3.6e-07 59.7 79 39.2
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 8.0e-07 58.5 55 47.3
A08p32250 Brassica napus HOM05D015260 ORTHO05D003858 1.0e-06 58.2 57 47.4
BraA08t35148Z Brassica rapa HOM05D015260 ORTHO05D003858 1.0e-06 58.2 57 47.4
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.4e-06 57.8 190 29.5
C08p19630 Brassica napus HOM05D015260 ORTHO05D003858 1.8e-06 57.4 99 36.4
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 4.0e-06 56.2 74 35.1
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 8.8e-06 55.1 79 30.4


User provided reference genes

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