Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 0.0e+00 1456.8 749 100.0
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1121.3 734 77.9
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1114.0 753 74.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1107.8 753 74.1
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 747 74.8
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1100.5 745 76.1
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1094.0 745 73.2
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 752 74.2
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1087.8 747 72.8
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 0.0e+00 1084.7 742 73.3
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 745 73.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 746 73.9
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1082.4 751 72.3
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1080.9 741 73.5
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1080.5 745 73.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1080.1 746 73.9
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1078.5 747 72.2
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1077.0 747 72.2
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1075.5 740 73.1
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1075.5 747 72.3
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 5.1e-312 1074.7 779 71.8
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.1e-312 1074.7 742 72.8
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.0e-311 1073.2 743 73.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.6e-311 1070.8 757 71.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 6.1e-311 1070.5 757 71.5
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 1.0e-310 1069.7 747 72.0
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.7e-310 1068.9 764 70.7
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.3e-310 1068.5 754 72.1
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 3.3e-309 1064.7 744 71.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.1e-308 1062.0 744 71.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.8e-308 1061.6 747 71.2
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.6e-308 1061.2 746 72.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 2.4e-307 1058.5 742 72.8
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.4e-307 1058.5 747 71.1
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.0e-306 1055.4 742 72.6
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.0e-306 1055.4 744 71.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.3e-305 1052.7 742 72.5
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 1.7e-305 1052.4 745 70.7
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.7e-305 1052.4 748 70.9
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.2e-305 1052.0 752 71.4
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 1.9e-304 1048.9 742 70.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 5.4e-304 1047.3 744 70.3
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 5.4e-304 1047.3 747 72.2
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 7.1e-304 1047.0 743 70.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 9.2e-304 1046.6 744 70.3
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.6e-303 1045.8 744 71.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 2.7e-303 1045.0 747 70.0
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.3e-302 1042.7 747 71.1
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 9.0e-299 1030.0 747 69.6
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 7.6e-298 1026.9 745 69.3
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 4.9e-297 1024.2 747 69.2
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 4.9e-297 1024.2 745 69.4
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.6e-295 1019.2 745 68.9
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.1e-295 1018.8 761 68.5
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.7e-295 1018.5 745 69.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.7e-294 1015.8 756 69.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 3.0e-294 1015.0 752 68.5
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 6.6e-294 1013.8 681 76.5
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 4.3e-293 1011.1 746 70.6
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.3e-293 1011.1 706 72.8
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 3.6e-292 1008.1 751 68.4
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.9e-288 995.7 745 67.7
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 4.2e-288 994.6 741 67.9
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.1e-287 992.3 744 67.6
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 5.1e-286 987.6 744 69.0
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.3e-284 983.0 745 67.7
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.8e-284 981.1 745 67.1
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.2e-284 980.7 740 68.5
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.1e-284 980.3 740 68.6
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.1e-283 978.4 759 66.7
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.6e-282 975.3 740 67.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.8e-282 974.2 740 67.3
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.3e-281 973.0 745 66.6
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 7.1e-280 967.2 756 65.1
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 9.3e-280 966.8 745 66.4
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 4.6e-279 964.5 752 67.0
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 6.7e-278 960.7 744 65.7
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 9.6e-277 956.8 745 65.2
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 4.9e-273 944.5 745 65.0
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 4.9e-273 944.5 745 65.0
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.4e-272 943.0 745 64.8
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.4e-272 943.0 745 64.8
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.4e-272 943.0 745 64.7
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 7.1e-272 940.6 745 64.7
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 7.1e-272 940.6 745 64.7
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.5e-271 938.3 758 64.9
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.6e-271 937.9 745 64.3
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 6.0e-271 937.6 770 62.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-270 936.4 745 64.3
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.3e-270 936.4 745 64.3
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.3e-270 935.6 743 66.2
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 2.5e-269 932.2 743 64.7
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 5.7e-269 931.0 743 65.4
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 9.0e-267 923.7 726 66.1
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.3e-265 919.8 753 62.2
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 8.5e-265 917.1 741 62.8
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.4e-259 899.0 656 69.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.1e-256 890.2 625 71.7
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 6.3e-252 874.4 747 60.1
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.1e-251 873.6 748 60.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.1e-251 871.7 745 61.2
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.7e-249 866.3 739 61.0
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.6e-247 859.8 691 64.1
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.8e-236 822.4 747 58.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.2e-234 817.0 811 54.3
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 3.5e-234 815.5 748 58.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 3.5e-234 815.5 748 58.3
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.2e-231 807.0 746 57.5
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 8.0e-231 804.3 746 57.5
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 5.7e-229 798.1 640 65.2
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.3e-225 786.2 746 57.6
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 3.8e-225 785.4 721 57.8
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.5e-224 782.7 528 74.1
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.2e-213 747.3 526 71.7
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.4e-213 745.7 533 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 6.6e-209 731.5 741 52.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.3e-208 728.8 744 53.1
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 7.3e-208 728.0 750 51.9
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 9.5e-200 701.0 708 54.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 6.8e-198 694.9 537 65.9
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.3e-196 690.6 547 66.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.8e-190 670.2 726 50.4
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 9.0e-174 614.8 745 48.5
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 6.0e-162 575.5 603 52.4
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 4.2e-155 552.7 375 74.4
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 6.5e-132 475.7 369 64.2
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 5.9e-125 452.6 345 65.8
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.2e-112 411.8 724 36.6
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 2.0e-109 401.0 466 48.9
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 7.5e-88 329.3 754 29.6
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.1e-84 316.6 225 68.4
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.1e-83 315.5 832 29.1
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 6.4e-79 299.7 530 39.2
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.1e-73 282.3 213 70.0
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.5e-48 198.7 212 54.7
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 7.6e-40 169.9 124 65.3
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 8.4e-39 166.4 197 50.3
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 9.3e-38 162.9 198 48.0
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.5e-35 154.8 136 61.0
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 5.9e-32 143.7 235 41.3
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 7.2e-30 136.7 113 62.8
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 2.7e-29 134.8 102 63.7
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.6e-29 134.4 92 69.6
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 5.9e-24 117.1 218 40.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.3e-23 115.9 80 70.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.1e-22 112.8 91 59.3
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.2e-21 109.4 227 37.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.8e-18 98.2 98 49.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 5.3e-17 94.0 92 52.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.5e-16 91.3 74 59.5
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 7.7e-16 90.1 111 43.2
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.6e-13 82.4 89 49.4
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.8e-12 79.0 79 51.9
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 4.4e-11 74.3 101 42.6
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.4e-11 74.3 64 57.8
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.3e-10 72.8 59 64.4
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 1.6e-08 65.9 67 53.7
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.9e-08 63.9 65 49.2
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.9e-08 63.9 65 49.2
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 3.8e-07 61.2 65 47.7
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 4.2e-06 57.8 63 50.8


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